Literature DB >> 27190565

Future microfluidic and nanofluidic modular platforms for nucleic acid liquid biopsy in precision medicine.

Ana Egatz-Gomez1, Ceming Wang1, Flora Klacsmann1, Zehao Pan1, Steve Marczak1, Yunshan Wang2, Gongchen Sun1, Satyajyoti Senapati1, Hsueh-Chia Chang1.   

Abstract

Nucleic acid biomarkers have enormous potential in non-invasive diagnostics and disease management. In medical research and in the near future in the clinics, there is a great demand for accurate miRNA, mRNA, and ctDNA identification and profiling. They may lead to screening of early stage cancer that is not detectable by tissue biopsy or imaging. Moreover, because their cost is low and they are non-invasive, they can become a regular screening test during annual checkups or allow a dynamic treatment program that adjusts its drug and dosage frequently. We briefly review a few existing viral and endogenous RNA assays that have been approved by the Federal Drug Administration. These tests are based on the main nucleic acid detection technologies, namely, quantitative reverse transcription polymerase chain reaction (PCR), microarrays, and next-generation sequencing. Several of the challenges that these three technologies still face regarding the quantitative measurement of a panel of nucleic acids are outlined. Finally, we review a cluster of microfluidic technologies from our group with potential for point-of-care nucleic acid quantification without nucleic acid amplification, designed to overcome specific limitations of current technologies. We suggest that integration of these technologies in a modular design can offer a low-cost, robust, and yet sensitive/selective platform for a variety of precision medicine applications.

Entities:  

Year:  2016        PMID: 27190565      PMCID: PMC4859827          DOI: 10.1063/1.4948525

Source DB:  PubMed          Journal:  Biomicrofluidics        ISSN: 1932-1058            Impact factor:   2.800


  158 in total

1.  An optimized isolation and labeling platform for accurate microRNA expression profiling.

Authors:  Jaclyn Shingara; Kerri Keiger; Jeffrey Shelton; Walairat Laosinchai-Wolf; Patricia Powers; Richard Conrad; David Brown; Emmanuel Labourier
Journal:  RNA       Date:  2005-07-25       Impact factor: 4.942

2.  Comparative evaluation of an extensive histopathologic examination and a real-time reverse-transcription-polymerase chain reaction assay for mammaglobin and cytokeratin 19 on axillary sentinel lymph nodes of breast carcinoma patients.

Authors:  Giuseppe Viale; Patrizia Dell'Orto; Maria O Biasi; Viviana Stufano; Luciana N De Brito Lima; Giovanni Paganelli; Patrick Maisonneuve; Janet M Vargo; George Green; Wuxiong Cao; Ailsa Swijter; Giovanni Mazzarol
Journal:  Ann Surg       Date:  2008-01       Impact factor: 12.969

3.  Frequency dependence of alternating current electrospray ionization mass spectrometry.

Authors:  Nishant Chetwani; Catherine A Cassou; David B Go; Hsueh-Chia Chang
Journal:  Anal Chem       Date:  2011-03-21       Impact factor: 6.986

Review 4.  Blood-based tests for colorectal cancer screening: do they threaten the survival of the FIT test?

Authors:  Robert S Bresalier; Scott Kopetz; Dean E Brenner
Journal:  Dig Dis Sci       Date:  2015-02-14       Impact factor: 3.199

Review 5.  Cancer biomarker detection: recent achievements and challenges.

Authors:  Li Wu; Xiaogang Qu
Journal:  Chem Soc Rev       Date:  2015-03-05       Impact factor: 54.564

6.  Normalization of microRNA expression levels in quantitative RT-PCR assays: identification of suitable reference RNA targets in normal and cancerous human solid tissues.

Authors:  Heidi J Peltier; Gary J Latham
Journal:  RNA       Date:  2008-03-28       Impact factor: 4.942

7.  Standardization of sample collection, isolation and analysis methods in extracellular vesicle research.

Authors:  Kenneth W Witwer; Edit I Buzás; Lynne T Bemis; Adriana Bora; Cecilia Lässer; Jan Lötvall; Esther N Nolte-'t Hoen; Melissa G Piper; Sarada Sivaraman; Johan Skog; Clotilde Théry; Marca H Wauben; Fred Hochberg
Journal:  J Extracell Vesicles       Date:  2013-05-27

8.  Circulating microRNAs: understanding the limits for quantitative measurement by real-time PCR.

Authors:  Anandwardhan A Hardikar; Ryan J Farr; Mugdha V Joglekar
Journal:  J Am Heart Assoc       Date:  2014-02-26       Impact factor: 5.501

Review 9.  Biases in small RNA deep sequencing data.

Authors:  Carsten A Raabe; Thean-Hock Tang; Juergen Brosius; Timofey S Rozhdestvensky
Journal:  Nucleic Acids Res       Date:  2013-11-05       Impact factor: 16.971

10.  Analytical validation of the PAM50-based Prosigna Breast Cancer Prognostic Gene Signature Assay and nCounter Analysis System using formalin-fixed paraffin-embedded breast tumor specimens.

Authors:  Torsten Nielsen; Brett Wallden; Carl Schaper; Sean Ferree; Shuzhen Liu; Dongxia Gao; Garrett Barry; Naeem Dowidar; Malini Maysuria; James Storhoff
Journal:  BMC Cancer       Date:  2014-03-13       Impact factor: 4.430

View more
  13 in total

1.  Resistive amplitude fingerprints during translocation of linear molecules through charged solid-state nanopores.

Authors:  Sebastian Sensale; Ceming Wang; Hsueh-Chia Chang
Journal:  J Chem Phys       Date:  2020-07-21       Impact factor: 3.488

2.  Preface to Special Topic: Selected Papers from the 2015 Annual Meeting of the AES Electrophoresis Society in Salt Lake City, Utah.

Authors:  Nathan S Swami; Michael Hughes
Journal:  Biomicrofluidics       Date:  2016-06-30       Impact factor: 2.800

Review 3.  Liquid biopsy technologies based on membrane microfluidics: High-yield purification and selective quantification of biomarkers in nanocarriers.

Authors:  Ceming Wang; Satyajyoti Senapati; Hsueh-Chia Chang
Journal:  Electrophoresis       Date:  2020-04-09       Impact factor: 3.535

Review 4.  Electrokinetic ion transport in nanofluidics and membranes with applications in bioanalysis and beyond.

Authors:  Li-Jing Cheng
Journal:  Biomicrofluidics       Date:  2018-04-12       Impact factor: 2.800

Review 5.  Recent advances in microfluidic methods in cancer liquid biopsy.

Authors:  Florina S Iliescu; Daniel P Poenar; Fang Yu; Ming Ni; Kiat Hwa Chan; Irina Cima; Hayden K Taylor; Igor Cima; Ciprian Iliescu
Journal:  Biomicrofluidics       Date:  2019-07-23       Impact factor: 2.800

Review 6.  Advances in liquid biopsy on-chip for cancer management: Technologies, biomarkers, and clinical analysis.

Authors:  Amogha Tadimety; Andrew Closson; Cathy Li; Song Yi; Ting Shen; John X J Zhang
Journal:  Crit Rev Clin Lab Sci       Date:  2018-02-01       Impact factor: 6.250

7.  Jumonji domain-containing protein 1A promotes cell growth and progression via transactivation of c-Myc expression and predicts a poor prognosis in cervical cancer.

Authors:  Jue Liu; Ming Zhu; Xue Xia; Yuliang Huang; Qunfeng Zhang; Xiaoxu Wang
Journal:  Oncotarget       Date:  2016-12-20

8.  Extracellular vesicle microRNA quantification from plasma using an integrated microfluidic device.

Authors:  Zeinab Ramshani; Chenguang Zhang; Katherine Richards; Lulu Chen; Geyang Xu; Bangyan L Stiles; Reginald Hill; Satyajyoti Senapati; David B Go; Hsueh-Chia Chang
Journal:  Commun Biol       Date:  2019-05-20

Review 9.  Evolving Clinical Utility of Liquid Biopsy in Gastrointestinal Cancers.

Authors:  Richard A Jacobson; Emily Munding; Dana M Hayden; Mia Levy; Timothy M Kuzel; Sam G Pappas; Ashiq Masood
Journal:  Cancers (Basel)       Date:  2019-08-13       Impact factor: 6.639

Review 10.  Current Technologies and Recent Developments for Screening of HPV-Associated Cervical and Oropharyngeal Cancers.

Authors:  Sunny S Shah; Satyajyoti Senapati; Flora Klacsmann; Daniel L Miller; Jeff J Johnson; Hsueh-Chia Chang; M Sharon Stack
Journal:  Cancers (Basel)       Date:  2016-09-09       Impact factor: 6.639

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.