Literature DB >> 27189622

An Algorithm for Creating Prognostic Systems for Cancer.

Dechang Chen1, Huan Wang2, Li Sheng3, Matthew T Hueman4, Donald E Henson5,6, Arnold M Schwartz7,8, Jigar A Patel9.   

Abstract

The TNM staging system is universally used for classification of cancer. This system is limited since it uses only three factors (tumor size, extent of spread to lymph nodes, and status of distant metastasis) to generate stage groups. To provide a more accurate description of cancer and thus better patient care, additional factors or variables should be used to classify cancer. In this paper we propose a hierarchical clustering algorithm to develop prognostic systems that classify cancer according to multiple prognostic factors. This algorithm has many potential applications in augmenting the data currently obtained in a staging system by allowing more prognostic factors to be incorporated. The algorithm clusters combinations of prognostic factors that are formed using categories of factors. The dissimilarity between two combinations is determined by the area between two corresponding survival curves. Groups from cutting the dendrogram and survival curves of the individual groups define our prognostic systems that classify patients using survival outcomes. A demonstration of the proposed algorithm is given for patients with breast cancer from the Surveillance, Epidemiology, and End Results (SEER) Program of the National Cancer Institute.

Entities:  

Keywords:  Area between curves; Breast cancer; Dendrogram; Hierarchical clustering; Prognostic system; Survival; TNM

Mesh:

Year:  2016        PMID: 27189622     DOI: 10.1007/s10916-016-0518-1

Source DB:  PubMed          Journal:  J Med Syst        ISSN: 0148-5598            Impact factor:   4.460


  10 in total

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Journal:  Pharm Stat       Date:  2010 Jan-Mar       Impact factor: 1.894

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4.  An algorithm for expanding the TNM staging system.

Authors:  Dechang Chen; Matthew T Hueman; Donald E Henson; Arnold M Schwartz
Journal:  Future Oncol       Date:  2016-02-24       Impact factor: 3.404

5.  Cancer statistics, 2015.

Authors:  Rebecca L Siegel; Kimberly D Miller; Ahmedin Jemal
Journal:  CA Cancer J Clin       Date:  2015-01-05       Impact factor: 508.702

6.  Relationship among outcome, stage of disease, and histologic grade for 22,616 cases of breast cancer. The basis for a prognostic index.

Authors:  D E Henson; L Ries; L S Freedman; M Carriaga
Journal:  Cancer       Date:  1991-11-15       Impact factor: 6.860

7.  Thin primary cutaneous malignant melanoma: a prognostic tree for 10-year metastasis is more accurate than American Joint Committee on Cancer staging.

Authors:  Phyllis A Gimotty; DuPont Guerry; Michael E Ming; Rosalie Elenitsas; Xiaowei Xu; Brian Czerniecki; Francis Spitz; Lynn Schuchter; David Elder
Journal:  J Clin Oncol       Date:  2004-08-09       Impact factor: 44.544

8.  Statistical inference methods for two crossing survival curves: a comparison of methods.

Authors:  Huimin Li; Dong Han; Yawen Hou; Huilin Chen; Zheng Chen
Journal:  PLoS One       Date:  2015-01-23       Impact factor: 3.240

9.  On an ensemble algorithm for clustering cancer patient data.

Authors:  Ran Qi; Dengyuan Wu; Li Sheng; Donald Henson; Arnold Schwartz; Eric Xu; Kai Xing; Dechang Chen
Journal:  BMC Syst Biol       Date:  2013-10-23

10.  Developing prognostic systems of cancer patients by ensemble clustering.

Authors:  Dechang Chen; Kai Xing; Donald Henson; Li Sheng; Arnold M Schwartz; Xiuzhen Cheng
Journal:  J Biomed Biotechnol       Date:  2009-06-23
  10 in total
  4 in total

1.  Multiclassifier Systems for Predicting Neurological Outcome of Patients with Severe Trauma and Polytrauma in Intensive Care Units.

Authors:  Javier González-Robledo; Félix Martín-González; Mercedes Sánchez-Barba; Fernando Sánchez-Hernández; María N Moreno-García
Journal:  J Med Syst       Date:  2017-07-28       Impact factor: 4.460

2.  Expanding TNM for lung cancer through machine learning.

Authors:  Matthew Hueman; Huan Wang; Zhenqiu Liu; Donald Henson; Cuong Nguyen; Dean Park; Li Sheng; Dechang Chen
Journal:  Thorac Cancer       Date:  2021-03-13       Impact factor: 3.500

3.  A prognostic system for epithelial ovarian carcinomas using machine learning.

Authors:  Philip M Grimley; Zhenqiu Liu; Kathleen M Darcy; Matthew T Hueman; Huan Wang; Li Sheng; Donald E Henson; Dechang Chen
Journal:  Acta Obstet Gynecol Scand       Date:  2021-03-18       Impact factor: 4.544

4.  Personalized four-category staging for predicting prognosis in patients with small bowel Adenocarcinoma: an international development and validation study.

Authors:  Zi-Hao Dai; Qi-Wen Wang; Qing-Wei Zhang; Xia-Lin Yan; Thomas Aparicio; Yang-Yang Zhou; Huan Wang; Chi-Hao Zhang; Aziz Zaanan; Pauline Afchain; Yan Zhang; Hui-Min Chen; Yun-Jie Gao; Zhi-Zheng Ge
Journal:  EBioMedicine       Date:  2020-09-24       Impact factor: 8.143

  4 in total

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