Literature DB >> 27189566

Pervasive Effects of Aging on Gene Expression in Wild Wolves.

Pauline Charruau1, Rachel A Johnston1, Daniel R Stahler2, Amanda Lea3, Noah Snyder-Mackler4, Douglas W Smith2, Bridgett M vonHoldt5, Steven W Cole6, Jenny Tung7, Robert K Wayne8.   

Abstract

Gene expression levels change as an individual ages and responds to environmental conditions. With the exception of humans, such patterns have principally been studied under controlled conditions, overlooking the array of developmental and environmental influences that organisms encounter under conditions in which natural selection operates. We used high-throughput RNA sequencing (RNA-Seq) of whole blood to assess the relative impacts of social status, age, disease, and sex on gene expression levels in a natural population of gray wolves (Canis lupus). Our findings suggest that age is broadly associated with gene expression levels, whereas other examined factors have minimal effects on gene expression patterns. Further, our results reveal evolutionarily conserved signatures of senescence, such as immunosenescence and metabolic aging, between wolves and humans despite major differences in life history and environment. The effects of aging on gene expression levels in wolves exhibit conservation with humans, but the more rapid expression differences observed in aging wolves is evolutionarily appropriate given the species' high level of extrinsic mortality due to intraspecific aggression. Some expression changes that occur with age can facilitate physical age-related changes that may enhance fitness in older wolves. However, the expression of these ancestral patterns of aging in descendant modern dogs living in highly modified domestic environments may be maladaptive and cause disease. This work provides evolutionary insight into aging patterns observed in domestic dogs and demonstrates the applicability of studying natural populations to investigate the mechanisms of aging.
© The Author 2016. Published by Oxford University Press on behalf of the Society for Molecular Biology and Evolution. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Canis lupus; RNA-Seq; canid; immunosenescence; senescence; transcriptome

Mesh:

Year:  2016        PMID: 27189566      PMCID: PMC5854094          DOI: 10.1093/molbev/msw072

Source DB:  PubMed          Journal:  Mol Biol Evol        ISSN: 0737-4038            Impact factor:   16.240


  88 in total

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2.  Regulation of plasma leptin in mice: influence of age, high-fat diet, and fasting.

Authors:  B Ahrén; S Månsson; R L Gingerich; P J Havel
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Review 3.  Chromatin modifications: the driving force of senescence and aging?

Authors:  Teresa Dimauro; Gregory David
Journal:  Aging (Albany NY)       Date:  2009-02-13       Impact factor: 5.682

4.  Social stress up-regulates inflammatory gene expression in the leukocyte transcriptome via β-adrenergic induction of myelopoiesis.

Authors:  Nicole D Powell; Erica K Sloan; Michael T Bailey; Jesusa M G Arevalo; Gregory E Miller; Edith Chen; Michael S Kobor; Brenda F Reader; John F Sheridan; Steven W Cole
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-23       Impact factor: 11.205

5.  Phylogenomic datasets provide both precision and accuracy in estimating the timescale of placental mammal phylogeny.

Authors:  Mario dos Reis; Jun Inoue; Masami Hasegawa; Robert J Asher; Philip C J Donoghue; Ziheng Yang
Journal:  Proc Biol Sci       Date:  2012-05-23       Impact factor: 5.349

6.  The genetic architecture of gene expression levels in wild baboons.

Authors:  Jenny Tung; Xiang Zhou; Susan C Alberts; Matthew Stephens; Yoav Gilad
Journal:  Elife       Date:  2015-02-25       Impact factor: 8.140

7.  Senescence-related changes in gene expression of peripheral blood mononuclear cells from octo/nonagenarians compared to their offspring.

Authors:  Amirah Abdul Rahman; Norwahidah Abdul Karim; Noor Aini Abdul Hamid; Roslan Harun; Wan Zurinah Wan Ngah
Journal:  Oxid Med Cell Longev       Date:  2013-11-27       Impact factor: 6.543

8.  Shared signatures of social stress and aging in peripheral blood mononuclear cell gene expression profiles.

Authors:  Noah Snyder-Mackler; Mehmet Somel; Jenny Tung
Journal:  Aging Cell       Date:  2014-06-23       Impact factor: 9.304

9.  HTSeq--a Python framework to work with high-throughput sequencing data.

Authors:  Simon Anders; Paul Theodor Pyl; Wolfgang Huber
Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

10.  edgeR: a Bioconductor package for differential expression analysis of digital gene expression data.

Authors:  Mark D Robinson; Davis J McCarthy; Gordon K Smyth
Journal:  Bioinformatics       Date:  2009-11-11       Impact factor: 6.937

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  10 in total

1.  Genome-Wide Patterns of Gene Expression in a Wild Primate Indicate Species-Specific Mechanisms Associated with Tolerance to Natural Simian Immunodeficiency Virus Infection.

Authors:  Noah D Simons; Geeta N Eick; Maria J Ruiz-Lopez; David Hyeroba; Patrick A Omeja; Geoffrey Weny; HaoQiang Zheng; Anupama Shankar; Simon D W Frost; James H Jones; Colin A Chapman; William M Switzer; Tony L Goldberg; Kirstin N Sterner; Nelson Ting
Journal:  Genome Biol Evol       Date:  2019-06-01       Impact factor: 3.416

Review 2.  Functional genomic insights into the environmental determinants of mammalian fitness.

Authors:  Noah Snyder-Mackler; Amanda J Lea
Journal:  Curr Opin Genet Dev       Date:  2018-08-22       Impact factor: 5.578

Review 3.  Developmental plasticity: Bridging research in evolution and human health.

Authors:  Amanda J Lea; Jenny Tung; Elizabeth A Archie; Susan C Alberts
Journal:  Evol Med Public Health       Date:  2018-02-05

Review 4.  Maximizing ecological and evolutionary insight in bisulfite sequencing data sets.

Authors:  Amanda J Lea; Tauras P Vilgalys; Paul A P Durst; Jenny Tung
Journal:  Nat Ecol Evol       Date:  2017-07-21       Impact factor: 15.460

5.  Epigenomics and gene regulation in mammalian social systems.

Authors:  Tania P Guerrero; Jörns Fickel; Sarah Benhaiem; Alexandra Weyrich
Journal:  Curr Zool       Date:  2020-02-25       Impact factor: 2.624

6.  Blood transcriptome analysis revealing aging gene expression profiles in red panda.

Authors:  Jing Luo; Liang Zhang; Fujun Shen; Li Luo; Lei Chen; Zhenxin Fan; Rong Hou; Bisong Yue; Xiuyue Zhang
Journal:  PeerJ       Date:  2022-07-22       Impact factor: 3.061

7.  K Locus Effects in Gray Wolves: Experimental Assessment of TLR3 Signaling and the Gene Expression Response to Canine Distemper Virus.

Authors:  Rachel A Johnston; James G Rheinwald; Bridgett M vonHoldt; Daniel R Stahler; William Lowry; Jenny Tung; Robert K Wayne
Journal:  J Hered       Date:  2021-08-25       Impact factor: 2.679

8.  Activity of Genes with Functions in Human Williams-Beuren Syndrome Is Impacted by Mobile Element Insertions in the Gray Wolf Genome.

Authors:  Bridgett M vonHoldt; Sarah S Ji; Matthew L Aardema; Daniel R Stahler; Monique A R Udell; Janet S Sinsheimer
Journal:  Genome Biol Evol       Date:  2018-06-01       Impact factor: 3.416

9.  Transcriptome analysis reveals immune-related gene expression changes with age in giant panda (Ailuropoda melanoleuca) blood.

Authors:  Lianming Du; Qin Liu; Fujun Shen; Zhenxin Fan; Rong Hou; Bisong Yue; Xiuyue Zhang
Journal:  Aging (Albany NY)       Date:  2019-01-14       Impact factor: 5.682

10.  Effects of aging on gene expression in blood of captive Tibetan macaques ( Macaca thibetana) and comparisons with expression in humans.

Authors:  Chao-Chao Yan; Xin-Shang Zhang; Liang Zhou; Qiao Yang; Min Zhou; Lin-Wan Zhang; Jin-Chuan Xing; Zhi-Feng Yan; Megan Price; Jing Li; Bi-Song Yue; Zhen-Xin Fan
Journal:  Zool Res       Date:  2020-09-18
  10 in total

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