Literature DB >> 27173900

Reply to Bemm et al. and Arakawa: Identifying foreign genes in independent Hypsibius dujardini genome assemblies.

Thomas C Boothby1, Bob Goldstein2.   

Abstract

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Year:  2016        PMID： 27173900      PMCID： PMC4896697          DOI： 10.1073/pnas.1601149113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  14 in total

1.  Massive horizontal gene transfer in bdelloid rotifers.

Authors:  Eugene A Gladyshev; Matthew Meselson; Irina R Arkhipova
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

2.  Genome of a tardigrade: Horizontal gene transfer or bacterial contamination?

Authors:  Felix Bemm; Clemens Leonard Weiß; Jörg Schultz; Frank Förster
Journal:  Proc Natl Acad Sci U S A       Date:  2016-05-12       Impact factor: 11.205

3.  Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.

Authors:  Julie C Dunning Hotopp; Michael E Clark; Deodoro C S G Oliveira; Jeremy M Foster; Peter Fischer; Mónica C Muñoz Torres; Jonathan D Giebel; Nikhil Kumar; Nadeeza Ishmael; Shiliang Wang; Jessica Ingram; Rahul V Nene; Jessica Shepard; Jeffrey Tomkins; Stephen Richards; David J Spiro; Elodie Ghedin; Barton E Slatko; Hervé Tettelin; John H Werren
Journal:  Science       Date:  2007-08-30       Impact factor: 47.728

4.  Evidence for extensive horizontal gene transfer from the draft genome of a tardigrade.

Authors:  Thomas C Boothby; Jennifer R Tenlen; Frank W Smith; Jeremy R Wang; Kiera A Patanella; Erin Osborne Nishimura; Sophia C Tintori; Qing Li; Corbin D Jones; Mark Yandell; David N Messina; Jarret Glasscock; Bob Goldstein
Journal:  Proc Natl Acad Sci U S A       Date:  2015-11-23       Impact factor: 11.205

5.  No evidence for extensive horizontal gene transfer in the genome of the tardigrade Hypsibius dujardini.

Authors:  Georgios Koutsovoulos; Sujai Kumar; Dominik R Laetsch; Lewis Stevens; Jennifer Daub; Claire Conlon; Habib Maroon; Fran Thomas; Aziz A Aboobaker; Mark Blaxter
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-24       Impact factor: 11.205

6.  Efficient subtraction of insect rRNA prior to transcriptome analysis of Wolbachia-Drosophila lateral gene transfer.

Authors:  Nikhil Kumar; Todd Creasy; Yezhou Sun; Melissa Flowers; Luke J Tallon; Julie C Dunning Hotopp
Journal:  BMC Res Notes       Date:  2012-05-14

7.  Blobology: exploring raw genome data for contaminants, symbionts and parasites using taxon-annotated GC-coverage plots.

Authors:  Sujai Kumar; Martin Jones; Georgios Koutsovoulos; Michael Clarke; Mark Blaxter
Journal:  Front Genet       Date:  2013-11-29       Impact factor: 4.599

8.  Extensive duplication of the Wolbachia DNA in chromosome four of Drosophila ananassae.

Authors:  Lisa Klasson; Nikhil Kumar; Robin Bromley; Karsten Sieber; Melissa Flowers; Sandra H Ott; Luke J Tallon; Siv G E Andersson; Julie C Dunning Hotopp
Journal:  BMC Genomics       Date:  2014-12-12       Impact factor: 3.969

9.  Identifying contamination with advanced visualization and analysis practices: metagenomic approaches for eukaryotic genome assemblies.

Authors:  Tom O Delmont; A Murat Eren
Journal:  PeerJ       Date:  2016-03-29       Impact factor: 2.984

10.  Horizontal gene transfer in bdelloid rotifers is ancient, ongoing and more frequent in species from desiccating habitats.

Authors:  Isobel Eyres; Chiara Boschetti; Alastair Crisp; Thomas P Smith; Diego Fontaneto; Alan Tunnacliffe; Timothy G Barraclough
Journal:  BMC Biol       Date:  2015-11-04       Impact factor: 7.431
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  6 in total

1.  The Microbial Community of Tardigrades: Environmental Influence and Species Specificity of Microbiome Structure and Composition.

Authors:  Matteo Vecchi; Irene L G Newton; Michele Cesari; Lorena Rebecchi; Roberto Guidetti
Journal:  Microb Ecol       Date:  2018-01-15       Impact factor: 4.552

2.  Ultralow Input Genome Sequencing Library Preparation from a Single Tardigrade Specimen.

Authors:  Yuki Yoshida; Sayuri Konno; Ryousuke Nishino; Yumi Murai; Masaru Tomita; Kazuharu Arakawa
Journal:  J Vis Exp       Date:  2018-07-15       Impact factor: 1.355

Review 3.  Deciphering the Biological Enigma-Genomic Evolution Underlying Anhydrobiosis in the Phylum Tardigrada and the Chironomid Polypedilum vanderplanki.

Authors:  Yuki Yoshida; Sae Tanaka
Journal:  Insects       Date:  2022-06-19       Impact factor: 3.139

4.  Comparative genomics of the tardigrades Hypsibius dujardini and Ramazzottius varieornatus.

Authors:  Yuki Yoshida; Georgios Koutsovoulos; Dominik R Laetsch; Lewis Stevens; Sujai Kumar; Daiki D Horikawa; Kyoko Ishino; Shiori Komine; Takekazu Kunieda; Masaru Tomita; Mark Blaxter; Kazuharu Arakawa
Journal:  PLoS Biol       Date:  2017-07-27       Impact factor: 8.029

5.  Preprinting Microbiology.

Authors:  Patrick D Schloss
Journal:  MBio       Date:  2017-05-23       Impact factor: 7.867

6.  Horizontal gene transfer from genetically modified plants - Regulatory considerations.

Authors:  Joshua G Philips; Elena Martin-Avila; Andrea V Robold
Journal:  Front Bioeng Biotechnol       Date:  2022-08-31
  6 in total

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