Literature DB >> 27172244

Time to move on: Modeling transcription dynamics during an embryonic transition away from maternal control.

Junbo Liu1, Yanyu Xiao2, Tongli Zhang3, Jun Ma1,4.   

Abstract

In a recent study, we investigated the regulation of hunchback (hb) transcription dynamics in Drosophila embryos. Our results suggest that shutdown of hb transcription at early nuclear cycle (nc) 14 is an event associated with the global changes taking place during the mid-blastula transition (MBT). Here we have developed a simple model of hb transcription dynamics during this transition time. With kinetic parameters estimated from our published experimental data, the model describes the dynamical processes of hb gene transcription and hb mRNA accumulation. With two steps, transcription onset upon exiting the previous mitosis followed by a sudden impact that blocks gene activation, the model recapitulates the observed dynamics of hb transcription during the nc14 interphase. The timing of gene inactivation is essential, as its alterations lead to changes in both hb transcription dynamics and hb mRNA levels. Our model provides a clear dynamical picture of hb transcription regulation as one of the many, actively regulated events concurrently taking place during the MBT.

Entities:  

Keywords:  Drosophila; bicoid; kinetic parameters; mathematical modeling; mid-blastula transition; morphogen; systems biology; transcription dynamics

Mesh:

Substances:

Year:  2016        PMID: 27172244      PMCID: PMC4970530          DOI: 10.1080/19336934.2016.1188231

Source DB:  PubMed          Journal:  Fly (Austin)        ISSN: 1933-6934            Impact factor:   2.160


  40 in total

1.  Progression of the cell cycle through mitosis leads to abortion of nascent transcripts.

Authors:  A W Shermoen; P H O'Farrell
Journal:  Cell       Date:  1991-10-18       Impact factor: 41.582

Review 2.  Transcriptional elongation checkpoint control in development and disease.

Authors:  Edwin Smith; Ali Shilatifard
Journal:  Genes Dev       Date:  2013-05-15       Impact factor: 11.361

Review 3.  Paused RNA polymerase II as a developmental checkpoint.

Authors:  Michael Levine
Journal:  Cell       Date:  2011-05-13       Impact factor: 41.582

4.  Adaptation of the length scale and amplitude of the Bicoid gradient profile to achieve robust patterning in abnormally large Drosophila melanogaster embryos.

Authors:  David Cheung; Cecelia Miles; Martin Kreitman; Jun Ma
Journal:  Development       Date:  2013-11-27       Impact factor: 6.868

Review 5.  Seeing is believing: the bicoid morphogen gradient matures.

Authors:  Anne Ephrussi; Daniel St Johnston
Journal:  Cell       Date:  2004-01-23       Impact factor: 41.582

6.  Zelda binding in the early Drosophila melanogaster embryo marks regions subsequently activated at the maternal-to-zygotic transition.

Authors:  Melissa M Harrison; Xiao-Yong Li; Tommy Kaplan; Michael R Botchan; Michael B Eisen
Journal:  PLoS Genet       Date:  2011-10-20       Impact factor: 5.917

7.  A global change in RNA polymerase II pausing during the Drosophila midblastula transition.

Authors:  Kai Chen; Jeff Johnston; Wanqing Shao; Samuel Meier; Cynthia Staber; Julia Zeitlinger
Journal:  Elife       Date:  2013-08-13       Impact factor: 8.140

8.  Dampened regulates the activating potency of Bicoid and the embryonic patterning outcome in Drosophila.

Authors:  Junbo Liu; Jun Ma
Journal:  Nat Commun       Date:  2013       Impact factor: 14.919

9.  Uncovering a dynamic feature of the transcriptional regulatory network for anterior-posterior patterning in the Drosophila embryo.

Authors:  Junbo Liu; Jun Ma
Journal:  PLoS One       Date:  2013-04-30       Impact factor: 3.240

10.  Canalization of gene expression and domain shifts in the Drosophila blastoderm by dynamical attractors.

Authors:  Svetlana Surkova; Alexander V Spirov; Vitaly V Gursky; Hilde Janssens; Ah-Ram Kim; Ovidiu Radulescu; Carlos E Vanario-Alonso; David H Sharp; Maria Samsonova; John Reinitz
Journal:  PLoS Comput Biol       Date:  2009-03-13       Impact factor: 4.475

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  1 in total

1.  The dynamic transmission of positional information in stau- mutants during Drosophila embryogenesis.

Authors:  Zhe Yang; Hongcun Zhu; Kakit Kong; Xiaoxuan Wu; Jiayi Chen; Peiyao Li; Jialong Jiang; Jinchao Zhao; Bofei Cui; Feng Liu
Journal:  Elife       Date:  2020-06-08       Impact factor: 8.140

  1 in total

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