Literature DB >> 23699407

Transcriptional elongation checkpoint control in development and disease.

Edwin Smith1, Ali Shilatifard.   

Abstract

Transcriptional elongation control by RNA polymerase II and its associated factors has taken center stage as a process essential for the regulation of gene expression throughout development. In this review, we analyze recent findings on the identification of factors functioning in the regulation of the transcriptional elongation checkpoint control (TECC) stage of gene expression and how the factors' misregulation is associated with disease pathogenesis, including cancer.

Entities:  

Keywords:  RNA polymerase II; cancer; chromatin; elongation; transcription

Mesh：

Substances：

Year:  2013        PMID： 23699407      PMCID： PMC3672643          DOI： 10.1101/gad.215137.113

Source DB:  PubMed          Journal:  Genes Dev        ISSN： 0890-9369            Impact factor:   11.361


  92 in total

1.  Hematopoiesis controlled by distinct TIF1gamma and Smad4 branches of the TGFbeta pathway.

Authors:  Wei He; David C Dorn; Hediye Erdjument-Bromage; Paul Tempst; Malcolm A S Moore; Joan Massagué
Journal:  Cell       Date:  2006-06-02       Impact factor: 41.582

Review 2.  The super elongation complex (SEC) family in transcriptional control.

Authors:  Zhuojuan Luo; Chengqi Lin; Ali Shilatifard
Journal:  Nat Rev Mol Cell Biol       Date:  2012-08-16       Impact factor: 94.444

3.  The RNA Pol II elongation factor Ell3 marks enhancers in ES cells and primes future gene activation.

Authors:  Chengqi Lin; Alexander S Garruss; Zhuojuan Luo; Fengli Guo; Ali Shilatifard
Journal:  Cell       Date:  2012-12-27       Impact factor: 41.582

4.  The chromatin-specific transcription elongation factor FACT comprises human SPT16 and SSRP1 proteins.

Authors:  G Orphanides; W H Wu; W S Lane; M Hampsey; D Reinberg
Journal:  Nature       Date:  1999-07-15       Impact factor: 49.962

5.  Regulating the regulators: the pervasive effects of Pol II pausing on stimulus-responsive gene networks.

Authors:  Daniel A Gilchrist; George Fromm; Gilberto dos Santos; Linh N Pham; Ivy E McDaniel; Adam Burkholder; David C Fargo; Karen Adelman
Journal:  Genes Dev       Date:  2012-05-01       Impact factor: 11.361

6.  Adult hematopoiesis is regulated by TIF1γ, a repressor of TAL1 and PU.1 transcriptional activity.

Authors:  Sophie Kusy; Nathalie Gault; Federica Ferri; Daniel Lewandowski; Vilma Barroca; Agnieszka Jaracz-Ros; Regine Losson; Paul-Henri Romeo
Journal:  Cell Stem Cell       Date:  2011-04-08       Impact factor: 24.633

7.  Transcription factor and polymerase recruitment, modification, and movement on dhsp70 in vivo in the minutes following heat shock.

Authors:  Amber K Boehm; Abbie Saunders; Janis Werner; John T Lis
Journal:  Mol Cell Biol       Date:  2003-11       Impact factor: 4.272

8.  Bromodomain and extra-terminal (BET) bromodomain inhibition activate transcription via transient release of positive transcription elongation factor b (P-TEFb) from 7SK small nuclear ribonucleoprotein.

Authors:  Koen Bartholomeeusen; Yanhui Xiang; Koh Fujinaga; B Matija Peterlin
Journal:  J Biol Chem       Date:  2012-09-05       Impact factor: 5.157

9.  RNA polymerase mapping during stress responses reveals widespread nonproductive transcription in yeast.

Authors:  Tae Soo Kim; Chih Long Liu; Moran Yassour; John Holik; Nir Friedman; Stephen Buratowski; Oliver J Rando
Journal:  Genome Biol       Date:  2010-07-16       Impact factor: 13.583

10.  Genome-Wide Analysis of Nascent Transcription in Saccharomyces cerevisiae.

Authors:  Anastasia McKinlay; Carlos L Araya; Stanley Fields
Journal:  G3 (Bethesda)       Date:  2011-12-01       Impact factor: 3.154
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  37 in total

1.  HIV Tat controls RNA Polymerase II and the epigenetic landscape to transcriptionally reprogram target immune cells.

Authors:  Jonathan E Reeder; Youn-Tae Kwak; Ryan P McNamara; Christian V Forst; Iván D'Orso
Journal:  Elife       Date:  2015-10-21       Impact factor: 8.140

2.  PAF1, a Molecular Regulator of Promoter-Proximal Pausing by RNA Polymerase II.

Authors:  Fei Xavier Chen; Ashley R Woodfin; Alessandro Gardini; Ryan A Rickels; Stacy A Marshall; Edwin R Smith; Ramin Shiekhattar; Ali Shilatifard
Journal:  Cell       Date:  2015-08-13       Impact factor: 41.582

Review 3.  Transcription factors that influence RNA polymerases I and II: To what extent is mechanism of action conserved?

Authors:  Yinfeng Zhang; Saman M Najmi; David A Schneider
Journal:  Biochim Biophys Acta Gene Regul Mech       Date:  2016-10-27       Impact factor: 4.490

4.  Super elongation complex promotes early HIV transcription and its function is modulated by P-TEFb.

Authors:  Alona Kuzmina; Simona Krasnopolsky; Ran Taube
Journal:  Transcription       Date:  2017-02-17

Review 5.  Cohesin Mutations in Cancer.

Authors:  Magali De Koninck; Ana Losada
Journal:  Cold Spring Harb Perspect Med       Date:  2016-12-01       Impact factor: 6.915

6.  The plant RNA polymerase II elongation complex: A hub coordinating transcript elongation and mRNA processing.

Authors:  Marion Grasser; Klaus D Grasser
Journal:  Transcription       Date:  2017-10-04

7.  RNA polymerase structure, function, regulation, dynamics, fidelity, and roles in gene expression.

Authors:  Maria L Kireeva; Mikhail Kashlev; Zachary F Burton
Journal:  Chem Rev       Date:  2013-11-13       Impact factor: 60.622

8.  7SK small nuclear RNA inhibits cancer cell proliferation through apoptosis induction.

Authors:  Farid Keramati; Ehsan Seyedjafari; Parviz Fallah; Masoud Soleimani; Hossein Ghanbarian
Journal:  Tumour Biol       Date:  2014-12-10

9.  PPM1G Binds 7SK RNA and Hexim1 To Block P-TEFb Assembly into the 7SK snRNP and Sustain Transcription Elongation.

Authors:  Swapna Aravind Gudipaty; Ryan P McNamara; Emily L Morton; Iván D'Orso
Journal:  Mol Cell Biol       Date:  2015-08-31       Impact factor: 4.272

Review 10.  7SKiing on chromatin: Move globally, act locally.

Authors:  Iván D'Orso
Journal:  RNA Biol       Date:  2016-04-29       Impact factor: 4.652
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