Literature DB >> 27164438

BrucellaBase: Genome information resource.

Jagadesan Sankarasubramanian1, Udayakumar S Vishnu1, L K M Abdul Khader1, Jayavel Sridhar1, Paramasamy Gunasekaran1, Jeyaprakash Rajendhran2.   

Abstract

Brucella sp. causes a major zoonotic disease, brucellosis. Brucella belongs to the family Brucellaceae under the order Rhizobiales of Alphaproteobacteria. We present BrucellaBase, a web-based platform, providing features of a genome database together with unique analysis tools. We have developed a web version of the multilocus sequence typing (MLST) (Whatmore et al., 2007) and phylogenetic analysis of Brucella spp. BrucellaBase currently contains genome data of 510 Brucella strains along with the user interfaces for BLAST, VFDB, CARD, pairwise genome alignment and MLST typing. Availability of these tools will enable the researchers interested in Brucella to get meaningful information from Brucella genome sequences. BrucellaBase will regularly be updated with new genome sequences, new features along with improvements in genome annotations. BrucellaBase is available online at http://www.dbtbrucellosis.in/brucellabase.html or http://59.99.226.203/brucellabase/homepage.html.
Copyright © 2016 Elsevier B.V. All rights reserved.

Entities:  

Keywords:  BLAST; BrucellaBase; CARD; MLST; Phylogeny; VFDB

Mesh:

Year:  2016        PMID: 27164438     DOI: 10.1016/j.meegid.2016.05.006

Source DB:  PubMed          Journal:  Infect Genet Evol        ISSN: 1567-1348            Impact factor:   3.342


  3 in total

1.  Genetic polymorphisms identify in species/biovars of Brucella isolated in China between 1953 and 2013 by MLST.

Authors:  Dong-Ri Piao; Xi Liu; Dong-Dong Di; Pei Xiao; Zhong-Zhi Zhao; Li-Qing Xu; Guo-Zhong Tian; Hong-Yan Zhao; Wei-Xing Fan; Bu-Yun Cui; Hai Jiang
Journal:  BMC Microbiol       Date:  2018-01-10       Impact factor: 3.605

2.  Non-adaptive Evolution of Trimeric Autotransporters in Brucellaceae.

Authors:  Mohammad Reza Rahbar; Mahboubeh Zarei; Abolfazl Jahangiri; Saeed Khalili; Navid Nezafat; Manica Negahdaripour; Yaser Fattahian; Amir Savardashtaki; Younes Ghasemi
Journal:  Front Microbiol       Date:  2020-11-12       Impact factor: 5.640

3.  Genetic Characterization and Comparative Genome Analysis of Brucella melitensis Isolates from India.

Authors:  Sarwar Azam; Sashi Bhushan Rao; Padmaja Jakka; Veera NarasimhaRao; Bindu Bhargavi; Vivek Kumar Gupta; Girish Radhakrishnan
Journal:  Int J Genomics       Date:  2016-07-25       Impact factor: 2.326

  3 in total

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