Literature DB >> 27158375

Profiling of the dynamically alteredgene expression in peripheral nerve injury using NGS RNA sequencing technique.

Duanyang Han1, Yixun Chen1, Yuhui Kou1, Jian Weng1, Bo Chen1, Youlai Yu1, Peixun Zhang1, Baoguo Jiang1.   

Abstract

Functional recovery of peripheral nerve injuries is of major demand in clinical practice worldwide. Although, to some extent, peripheral nervous system can spontaneously regenerate, post-injury recovery is often associated with poor functional outcome. The molecular mechanism controlling the peripheral nerve repair process is still majorly unclear. In this study, by utilizing the Next Generation Sequencing (NGS) RNA sequencing technique, we aim to profile the gene expression spectrum of the peripheral nerve repair. In total, we detected 2847 were differentially expressed at day 7 post crush nerve injury. The GO, Panther, IPA and GSEA analysis was performed to decipher the biological processes involving the differentially expressed genes. Collectively, our results highlighted the inflammatory response and related signaling pathway (NFkB and TNFa signaling) play key role in peripheral nerve repair regulation. Furthermore, Network analysis illustrated that the IL10, IL18, IFN-γ and PDCD1 were four key regulators with multiple participations in peripheral nerve repair and potentially exert influence to the repair process. The expression changes of IL10, IL18, IFN-γ, PDCD1 and TNFSF14 (LIGHT) were further validated by western blot analysis. Hopefully, the present study may provide useful platform to further reveal the molecular mechanism of peripheral nerve repair and discover promising treatment target to enhance peripheral nerve regeneration.

Entities:  

Keywords:  Peripheral nerve repair; RNA sequencing; inflammation and NFkB

Year:  2016        PMID: 27158375      PMCID: PMC4846932     

Source DB:  PubMed          Journal:  Am J Transl Res        ISSN: 1943-8141            Impact factor:   4.060


  57 in total

1.  Perineurial permeability to sodium during Wallerian degeneration in rat sciatic nerve.

Authors:  A Weerasuriya; C H Hockman
Journal:  Brain Res       Date:  1992-05-29       Impact factor: 3.252

2.  A quantitative spatial analysis of the blood-spinal cord barrier. I. Permeability changes after experimental spinal contusion injury.

Authors:  P G Popovich; P J Horner; B B Mullin; B T Stokes
Journal:  Exp Neurol       Date:  1996-12       Impact factor: 5.330

3.  Axon and Schwann cell partnership during nerve regrowth.

Authors:  Yuan Yuan Chen; David McDonald; Chu Cheng; Brooks Magnowski; Jeff Durand; Douglas W Zochodne
Journal:  J Neuropathol Exp Neurol       Date:  2005-07       Impact factor: 3.685

Review 4.  Next generation sequencing technology: Advances and applications.

Authors:  H P J Buermans; J T den Dunnen
Journal:  Biochim Biophys Acta       Date:  2014-07-01

5.  Somatic and axonal LIGHT signaling elicit degenerative and regenerative responses in motoneurons, respectively.

Authors:  Belkacem Otsmane; Anice Moumen; Julianne Aebischer; Emmanuelle Coque; Chamroeun Sar; Claire Sunyach; Céline Salsac; Jean Valmier; Sara Salinas; Melissa Bowerman; Cédric Raoul
Journal:  EMBO Rep       Date:  2014-03-24       Impact factor: 8.807

6.  Topographical differences in the vascular permeability of the peripheral nervous system.

Authors:  Y Olsson
Journal:  Acta Neuropathol       Date:  1968-01-02       Impact factor: 17.088

7.  MicroRNAs modulate Schwann cell response to nerve injury by reinforcing transcriptional silencing of dedifferentiation-related genes.

Authors:  Andreu Viader; Li-Wei Chang; Timothy Fahrner; Rakesh Nagarajan; Jeffrey Milbrandt
Journal:  J Neurosci       Date:  2011-11-30       Impact factor: 6.167

8.  Astrocytes expressing ALS-linked mutated SOD1 release factors selectively toxic to motor neurons.

Authors:  Makiko Nagai; Diane B Re; Tetsuya Nagata; Alcmène Chalazonitis; Thomas M Jessell; Hynek Wichterle; Serge Przedborski
Journal:  Nat Neurosci       Date:  2007-04-15       Impact factor: 24.884

9.  edgeR: a versatile tool for the analysis of shRNA-seq and CRISPR-Cas9 genetic screens.

Authors:  Zhiyin Dai; Julie M Sheridan; Linden J Gearing; Darcy L Moore; Shian Su; Sam Wormald; Stephen Wilcox; Liam O'Connor; Ross A Dickins; Marnie E Blewitt; Matthew E Ritchie
Journal:  F1000Res       Date:  2014-04-24

10.  DAVID Bioinformatics Resources: expanded annotation database and novel algorithms to better extract biology from large gene lists.

Authors:  Da Wei Huang; Brad T Sherman; Qina Tan; Joseph Kir; David Liu; David Bryant; Yongjian Guo; Robert Stephens; Michael W Baseler; H Clifford Lane; Richard A Lempicki
Journal:  Nucleic Acids Res       Date:  2007-06-18       Impact factor: 16.971

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  1 in total

1.  Gene set enrichment analysis and protein-protein interaction network analysis after sciatic nerve injury.

Authors:  Xiaoming Yang; Xi Xu; Xiaodong Cai; Jin He; Panjian Lu; Qi Guo; Gang Wang; Hui Zhu; Hongkui Wang; Chengbin Xue
Journal:  Ann Transl Med       Date:  2020-08
  1 in total

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