| Literature DB >> 27146283 |
Emilia Makarewicz1, Jan Lundell2, Agnieszka J Gordon1, Slawomir Berski3.
Abstract
Electronic structure of the XeOF2 molecule and its two complexes with HX (X= F, Cl, Br, I) molecules have been studied in the gas phase using quantum chemical topology methods: topological analysis of electron localization function (ELF), electron density, ρ(r), reduced gradient of electron density |RDG(r)| in real space, and symmetry adapted perturbation theory (SAPT) in the Hilbert space. The wave function has been approximated by the MP2 and DFT methods, using APF-D, B3LYP, M062X, and B2PLYP functionals, with the dispersion correction as proposed by Grimme (GD3). For the Xe-F and Xe=O bonds in the isolated XeOF2 molecule, the bonding ELF-localization basins have not been observed. According to the ELF results, these interactions are not of covalent nature with shared electron density. There are two stable F2OXe(…)HF complexes. The first one is stabilized by the F-H(…)F and Xe(…)F interactions (type I) and the second by the F-H(…)O hydrogen bond (type II). The SAPT analysis confirms the electrostatic term, Eelst ((1)) and the induction energy, Eind ((2)) to be the major contributors to stabilizing both types of complexes.Entities:
Keywords: ELF; Noble gas complexes; Quantum chemical topology; SAPT; Xenon
Year: 2016 PMID: 27146283 PMCID: PMC4856722 DOI: 10.1007/s00894-016-2970-8
Source DB: PubMed Journal: J Mol Model ISSN: 0948-5023 Impact factor: 1.810
Scheme 1The F2OXe…HF complexes identified experimentally by Brock et al. [3]
Fig. 1Geometrical structures of two types of the F2OXe…HF complexes, optimized at the DFT(B3LYP)/Def2-TZVPPD level – type I, stabilized by the F-H…F and Xe…F interactions and type II, stabilized by the F-H…O interaction
The optimized geometrical parameters for the structure type I of the F2OXe…HX (X= F, Cl, Br, I) complexes
| Param/method: | MP2 | APFD | M062X | B3LYP | B3LYP + GD3 | B2PLYP | B2PLYP + GD3 |
|---|---|---|---|---|---|---|---|
| HF | |||||||
| Xe-O | 1.763 | 1.785 | 1.789 | 1.804 | 1.804 | 1.795 | 1.795 |
| Xe…F | 2.938 | 2.915 | 2.929 | 3.022 | 3.080 | 2.980 | 3.006 |
| H…F2 | 1.844 | 1.801 | 1.894 | 1.813 | 1.848 | 1.824 | 1.850 |
| F2…X…F1 | 59 | 59 | 59 | 57 | 57 | 58 | 58 |
| HCl | |||||||
| Xe-O | 1.765 | 1.788 | 1.790 | 1.806 | 1.806 | 1.797 | 1.797 |
| Xe…Cl | 3.368 | 3.359 | 3.422 | 3.5 | 3.543 | 3.448 | 3.482 |
| H…F2 | 2.207 | 2.260 | 2.231 | 2.305 | 2.234 | 2.245 | 2.245 |
| F2…Xe…Cl | 66 | 67 | 64 | 65 | 64 | 65 | 64 |
| HBr | |||||||
| Xe-O | 1.766 | 1.788 | 1.790 | 1.807 | 1.806 | 1.798 | 1.797 |
| Xe…Br | 3.451 | 3.439 | 3.559 | 3.628 | 3.690 | 3.557 | 3.591 |
| H…F2 | 2.383 | 2.383 | 2.328 | 2.538 | 2.306 | 2.442 | 2.337 |
| F2…Xe…Br | 70 | 70 | 66 | 69 | 66 | 69 | 67 |
| HI | |||||||
| Xe-O | 1.767 | 1.790 | 1.791 | 1.809 | 1.808 | 1.799 | 1.798 |
| Xe…I | 3.593 | 3.588 | 3.729 | 3.784 | 3.847 | 3.703 | 3.758 |
| H…F2 | 2.732 | 2.809 | 2.542 | 3.658 | 2.658 | 3.003 | 2.605 |
| F2…Xe…I | 75 | 76 | 69 | 85 | 71 | 76 | 71 |
The optimized geometrical parameters for the structure type II of the F2OXe…HX (X= F, Cl, Br, I) complexes
| Param/method: | MP2 | APFD | M062X | B3LYP | B3LYP + GD3 | B2PLYP | B2PLYP + GD3 |
|---|---|---|---|---|---|---|---|
| HF | |||||||
| Xe-O | 1.777 | 1.800 | 1.803 | 1.819 | 1.819 | 1.809 | 1.808 |
| Xe…F | 3.273 | 3.205 | 3.128 | 3.424 | 3.409 | 3.354 | 3.359 |
| O…H | 1.782 | 1.746 | 1.824 | 1.779 | 1.791 | 1.790 | 1.799 |
| O-Xe…F | 54 | 53 | 58 | 51 | 51 | 53 | 53 |
| HCl | |||||||
| Xe-O | 1.773 | 1.797 | 1.798 | 1.806 | 1.814 | 1.804 | 1.804 |
| Xe…Cl | 3.664 | 3.627 | 3.577 | 3.986 | 3.828 | 3.852 | 3.785 |
| O…H | 1.944 | 1.893 | 2.052 | 2.305 | 2.006 | 1.994 | 2.000 |
| O-Xe…Cl | 59 | 59 | 63 | 53 | 57 | 57 | 58 |
| HBr | |||||||
| Xe-O | 1.773 | 1.797 | 1.797 | 1.814 | 1.813 | 1.803 | 1.813 |
| Xe…Br | 3.771 | 3.707 | 3.750 | 4.174 | 3.967 | 4.011 | 3.967 |
| O…H | 1.955 | 1.904 | 2.055 | 2.069 | 2.050 | 2.032 | 2.050 |
| O-Xe…Br | 60 | 61 | 63 | 54 | 58 | 57 | 59 |
| HI | |||||||
| Xe-O | 1.770 | 1.795 | 1.796 | 1.796 | 1.812 | 1.811 | 1.802 |
| Xe…I | 3.941 | 3.906 | 3.904 | 3.905 | 4.542 | 4.181 | 4.231 |
| O…H | 2.058 | 2.012 | 2.236 | 2.238 | 2.235 | 2.183 | 2.177 |
| O-Xe…I | 64 | 64 | 67 | 67 | 55 | 62 | 60 |
Fig. 2The critical points of the ρ(r) field and 2D maps of the Laplacian of ρ(r) field for the F2OXe…HF complexes
Properties of the bond critical point (BCP) and delocalization index values for the type I and type II F2OXe…HF complexes. All values are in atomic units
| A–B | δ(A,B) | ρBCP | ∇2ρBCP(r) | HBCP | εBCP |
|---|---|---|---|---|---|
| type I | |||||
| intermolecular interactions | |||||
| H…F | 0.035 | 0.025 | 0.122 | 0.003 | 0.310 |
| Xe…F | 0.087 | 0.016 | 0.070 | 0.003 | 0.227 |
| intramolecular interactions | |||||
| F-H | 0.376 | 0.354 | −3.014 | −0.835 | 0.001 |
| Xe-O | 1.539 | 0.213 | 0.201 | −0.157 | 0.030 |
| Xe-F | 0.819 | 0.141 | 0.271 | −0.078 | 0.114 |
| Xe-F(F-H…F) | 0.731 | 0.126 | 0.236 | −0.064 | 0.129 |
| type II | |||||
| intermolecular interactions | |||||
| H…O | 0.059 | 0.033 | 0.107 | −0.003 | 0.058 |
| intramolecular interactions | |||||
| F-H | 0.361 | 0.348 | −2.910 | 0.813 | 0.002 |
| Xe-O | 1.459 | 0.208 | 0.170 | −0.151 | 0.055 |
| Xe-F | 0.817 | 0.142 | 0.271 | −0.079 | 0.114 |
| Xe-F | 0.817 | 0.141 | 0.270 | −0.079 | 0.115 |
δ(A,B) delocalization index for pair of A,B atoms, ρ electron density for BCP, ∇ ρ (r) Laplacian of electron density for BCP, H total energy density for BCP, ε ellipticity for BCP
Values of the interaction (Eint) and dissociation (ΔEdis) energies corrected for the basis superposition error (BSSE) and zero-point vibrational energies (ΔZPVE) for both geometrical structure types of the F2OXe…HX (X= F, Cl) complexes. All energies are given in kcal/mol
| Molecule: | HF | HCl | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Structure: | Type I | Type II | Type I | Type II | ||||||||||||||||
| Method/param: | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE |
| MP2 | −7.82 | −6.62 | −4.97 | −7.16 | −5.51 | −7.36 | −6.15 | −4.29 | −6.97 | −5.11 | −5.54 | −4.66 | −5.66 | −5.34 | −4.35 | −5.58 | −4.43 | −5.45 | −5.36 | −4.35 |
| APFD | −8.12 | −7.87 | −6.21 | −7.15 | −5.49 | −7.91 | −7.76 | −5.80 | −7.54 | −5.58 | −5.41 | −5.27 | −6.24 | −5.09 | −4.11 | −5.59 | −5.42 | −6.70 | −5.39 | −4.11 |
| M062X | −8.21 | −7.9 | −6.07 | −7.44 | −5.62 | −7.96 | −7.77 | −5.85 | −7.78 | −5.86 | −5.14 | −4.93 | −5.81 | −4.79 | −3.91 | −5.11 | −4.94 | −6.12 | −5.09 | −3.91 |
| M062X + GD3 | −8.24 | −7.93 | −6.10 | −7.48 | −5.65 | −7.99 | −7.79 | −5.87 | −7.80 | −5.88 | −5.14 | −4.93 | −5.83 | −4.83 | −3.93 | −5.14 | −4.97 | −6.16 | −5.12 | −3.93 |
| B3LYP | −6.11 | −6.01 | −4.40 | −5.70 | −4.10 | −6.11 | −6.01 | −4.15 | −5.82 | −3.96 | −3.09 | −2.97 | −3.82 | −2.86 | −2.01 | −3.07 | −2.92 | −3.90 | −2.99 | −2.01 |
| B3LYP + GD3 | −6.55 | −6.34 | −4.78 | −6.82 | −5.26 | −7.38 | −7.28 | −5.41 | −7.11 | −5.24 | −5.07 | −4.93 | −5.89 | −4.81 | −3.85 | −5.11 | −4.97 | −6.16 | −5.05 | −3.85 |
| B2PLYP | −7.2 | −6.7 | −6.71 | −5.79 | −5.80 | −6.46 | −6.04 | −4.66 | −5.69 | −4.31 | −4.06 | −3.73 | −2.81 | −1.99 | −2.91 | −3.86 | −3.45 | −3.27 | −2.73 | −2.91 |
| B2PLYP + GD3 | −7.8 | −7.32 | −7.39 | −5.42 | −5.49 | −7.37 | −6.96 | −5.56 | −6.48 | −5.08 | −5.22 | −4.87 | −4.07 | −3.20 | −4.00 | −5.11 | −4.7 | −4.63 | −3.93 | −4.00 |
Values of the interaction (Eint) and dissociation (ΔEdis) energies corrected for the basis superposition error (BSSE) and zero-point vibrational energies (ΔZPVE) for both geometrical structure types of the F2OXe…HX (X=Br, I) complexes. All energies are given in kcal/mol
| Molecule: | HBr | HI | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| Structure: | Type I | Type II | Type I | Type II | ||||||||||||||||
| Method/param: | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE | Eint | ECP int | ECP int + ΔZPVE | ΔEdis | ΔEdis + ΔZPVE |
| MP2 | −5.62 | −4.45 | −5.26 | −5.48 | −4.67 | −5.56 | −4.11 | −5.27 | −5.36 | −4.20 | −5.53 | −4.32 | −4.94 | −5.44 | −4.82 | −4.97 | −3.48 | −4.43 | −4.86 | −3.91 |
| APFD | −5.55 | −5.39 | −6.32 | −5.30 | −4.37 | −5.43 | −5.24 | −6.55 | −5.26 | −3.96 | −5.29 | −5.17 | −5.90 | −5.09 | −4.36 | −4.3 | −4.17 | −5.25 | −4.20 | −3.13 |
| M062X | −4.8 | −4.61 | −6.18 | −4.56 | −2.99 | −4.65 | −4.45 | −6.24 | −4.75 | −2.96 | −4.2 | −4.08 | −5.14 | −4.01 | −2.94 | −3.75 | −3.61 | −4.84 | −3.77 | −2.53 |
| M062X + GD3 | −4.83 | −4.63 | −6.20 | −4.60 | −3.02 | −4.68 | −4.48 | −6.27 | −4.78 | −2.99 | −4.23 | −4.12 | −5.16 | −4.04 | −2.99 | −3.77 | −3.63 | −4.81 | −3.79 | −2.61 |
| B3LYP | −2.66 | −2.54 | −3.44 | −2.53 | −1.63 | −2.45 | −2.3 | −3.47 | −2.44 | −1.27 | −2.31 | −2.25 | −2.82 | −2.29 | −1.72 | −1.41 | −1.33 | −2.13 | −1.45 | −0.65 |
| B3LYP + GD3 | −4.81 | −4.68 | −5.50 | −4.60 | −3.78 | −4.78 | −4.64 | −5.81 | −4.77 | −3.60 | −4.29 | −4.22 | −4.99 | −4.18 | −3.41 | −3.93 | −3.84 | −4.84 | −3.94 | −2.94 |
| B2PLYP | −3.74 | −3.33 | −2.12 | −1.52 | −2.73 | −3.43 | −2.94 | −2.81 | −2.09 | −2.23 | −3.4 | −3 | −1.23 | −0.94 | −2.71 | −2.52 | −2.08 | −1.55 | −1.07 | −1.60 |
| B2PLYP + GD3 | −4.98 | −4.57 | −3.34 | −2.74 | −3.98 | −4.86 | −4.36 | −4.18 | −3.45 | −3.63 | −4.53 | −4.14 | −2.47 | −2.10 | −3.77 | −4.09 | −3.63 | −3.02 | −2.48 | −3.09 |
Vibrational stretching frequency shifts (in cm−1) for the ν(H-X), ν(Xe=O), νasym(Xe-F) and νasym(Xe-F) vibrations
| vib: | ν(H-X) | |||||||
| mol: | HF | HCl | HBr | HI | ||||
| Type: a | I | II | I | II | I | II | I | II |
| MP2 | −260 | −430 | −81 | −222 | −47 | −202 | −21 | −136 |
| APFD | −282 | −355 | −70 | −288 | −21 | −273 | −8 | −174 |
| M062X | −190 | −331 | −88 | −213 | 14 | −121 | −89 | −96 |
| M062X* | −190 | −332 | −84 | −211 | 15 | −120 | −88 | −94 |
| B3LYP | −277 | −375 | −62 | −194 | −7 | −151 | −1 | −84 |
| B3LYP* | −246 | −360 | −70 | −197 | −41 | −173 | −4 | −86 |
| B2PLYP | −268 | −349 | −72 | −193 | −25 | −164 | −12 | −87 |
| B2PLYP* | −247 | −336 | −76 | −248 | −92 | −165 | 23 | −51 |
| vib: | ν(Xe=O) | |||||||
| mol: | HF | HCl | HBr | HI | ||||
| Type: | I | II | I | II | I | II | I | II |
| MP2 | 12 | −43 | 5 | −30 | 4 | −28 | 3 | −20 |
| APFD | 13 | −17 | 9 | −17 | 8 | −15 | 3 | −11 |
| M062X | 15 | −15 | 8 | −8 | 5 | −7 | 3 | −4 |
| M062X* | 15 | −15 | 7 | −8 | 5 | −7 | 3 | −4 |
| B3LYP | 14 | −19 | 10 | −14 | 10 | −12 | 2 | −7 |
| B3LYP* | 14 | −19 | 9 | −12 | 10 | −10 | 8 | −5 |
| B2PLYP | 12 | −29 | 7 | −18 | 5 | −17 | 1 | −11 |
| B2PLYP* | 12 | −28 | 8 | −17 | 6 | −15 | 3 | −10 |
| vib: | νasym(Xe-F) | |||||||
| mol: | HF | HCl | HBr | HI | ||||
| Type: | I | II | I | II | I | II | I | II |
| MP2 | −99 | −48 | −290 | −174 | −306 | −204 | −349 | −262 |
| APFD | −93 | −38 | −300 | −153 | −296 | −169 | −332 | −264 |
| M062X | −97 | −46 | −300 | −257 | −159 | −87 | −272 | −262 |
| M062X* | −97 | −45 | −300 | −257 | −160 | −88 | −272 | −262 |
| B3LYP | −90 | −42 | −291 | −202 | −310 | −230 | −354 | −302 |
| B3LYP* | −90 | −42 | −286 | −211 | −307 | −234 | −327 | −294 |
| B2PLYP | −97 | −48 | −282 | −203 | −310 | −229 | −355 | −296 |
| B2PLYP* | −97 | −49 | −280 | −209 | −307 | −234 | −354 | −293 |
atype I complex is stabilized by X-H…F hydrogen bond and X…Xe interaction; type II complex is stabilized by F-H…O
Fig. 3The core and valence attractors of the η(r) field together with the basin populations (in e) for the XeOF2 molecule. Note that all the valence attractors are localized below and above the symmetry plane and no bonding attractors are observed
Fig. 42D and relief maps of the reduced density gradients for the F2OXe…HF complexes. The bond paths of ρ(r) field are shown for the type II structure
Interaction energy components (in kcal/mol) calculated using SAPT for the F2OXe…HF complex. Calculations have been performed using the Def2-TZVPPD basis set
| Component / structure | Type I | Type II |
|---|---|---|
| Eelst (1) | −12.12 | −9.95 |
| Eexch (1) | 10.06 | 10.50 |
| Eind (2) | −6.81 | −6.68 |
| Edisp (2) | −3.66 | −3.69 |
| Eind-exch (2) | 3.93 | 3.47 |
| Edisp-exch (2) | 0.62 | 0.60 |
| δint HF | −0.59 | −1.33 |
| Eint HF | −5.53 | −3.99 |
| Eint SAPT0 | −7.98 | −5.75 |
| Eint SAPT2 | −8.57 | −7.08 |