Literature DB >> 27140922

Single-Molecule Total Internal Reflection Fluorescence Microscopy.

Emily M Kudalkar1, Trisha N Davis1, Charles L Asbury2.   

Abstract

The advent of total internal reflection fluorescence (TIRF) microscopy has permitted visualization of biological events on an unprecedented scale: the single-molecule level. Using TIRF, it is now possible to view complex biological interactions such as cargo transport by a single molecular motor or DNA replication in real time. TIRF allows for visualization of single molecules by eliminating out-of-focus fluorescence and enhancing the signal-to-noise ratio. TIRF has been instrumental for studying in vitro interactions and has also been successfully implemented in live-cell imaging. Visualization of cytoskeletal structures and dynamics at the plasma membrane, such as endocytosis, exocytosis, and adhesion, has become much clearer using TIRF microscopy. Thanks to recent advances in optics and commercial availability, TIRF microscopy is becoming an increasingly popular and user-friendly technique. In this introduction, we describe the fundamental properties of TIRF microscopy and the advantages of using TIRF for single-molecule investigation.
© 2016 Cold Spring Harbor Laboratory Press.

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Year:  2016        PMID: 27140922      PMCID: PMC5577000          DOI: 10.1101/pdb.top077800

Source DB:  PubMed          Journal:  Cold Spring Harb Protoc        ISSN: 1559-6095


  23 in total

1.  Single molecular observation of the interaction of GroEL with substrate proteins.

Authors:  R Yamasaki; M Hoshino; T Wazawa; Y Ishii; T Yanagida; Y Kawata; T Higurashi; K Sakai; J Nagai; Y Goto
Journal:  J Mol Biol       Date:  1999-10-08       Impact factor: 5.469

2.  Initiation and re-initiation of DNA unwinding by the Escherichia coli Rep helicase.

Authors:  Taekjip Ha; Ivan Rasnik; Wei Cheng; Hazen P Babcock; George H Gauss; Timothy M Lohman; Steven Chu
Journal:  Nature       Date:  2002-10-10       Impact factor: 49.962

3.  Subunit counting in membrane-bound proteins.

Authors:  Maximilian H Ulbrich; Ehud Y Isacoff
Journal:  Nat Methods       Date:  2007-03-18       Impact factor: 28.547

4.  Single-molecule fluorescence spectroscopy of enzyme conformational dynamics and cleavage mechanism.

Authors:  T Ha; A Y Ting; J Liang; W B Caldwell; A A Deniz; D S Chemla; P G Schultz; S Weiss
Journal:  Proc Natl Acad Sci U S A       Date:  1999-02-02       Impact factor: 11.205

5.  Data Analysis for Total Internal Reflection Fluorescence Microscopy.

Authors:  Charles L Asbury
Journal:  Cold Spring Harb Protoc       Date:  2016-05-02

6.  Uncoupling of sister replisomes during eukaryotic DNA replication.

Authors:  Hasan Yardimci; Anna B Loveland; Satoshi Habuchi; Antoine M van Oijen; Johannes C Walter
Journal:  Mol Cell       Date:  2010-12-10       Impact factor: 17.970

7.  Ordered and dynamic assembly of single spliceosomes.

Authors:  Aaron A Hoskins; Larry J Friedman; Sarah S Gallagher; Daniel J Crawford; Eric G Anderson; Richard Wombacher; Nicholas Ramirez; Virginia W Cornish; Jeff Gelles; Melissa J Moore
Journal:  Science       Date:  2011-03-11       Impact factor: 47.728

8.  Visualizing single molecules inside living cells using total internal reflection fluorescence microscopy.

Authors:  G I Mashanov; D Tacon; A E Knight; M Peckham; Justin E Molloy
Journal:  Methods       Date:  2003-02       Impact factor: 3.608

9.  Real-time single-molecule observation of rolling-circle DNA replication.

Authors:  Nathan A Tanner; Joseph J Loparo; Samir M Hamdan; Slobodan Jergic; Nicholas E Dixon; Antoine M van Oijen
Journal:  Nucleic Acids Res       Date:  2009-01-20       Impact factor: 16.971

10.  Combined optical trapping and single-molecule fluorescence.

Authors:  Matthew J Lang; Polly M Fordyce; Steven M Block
Journal:  J Biol       Date:  2003-02-24
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  7 in total

Review 1.  A Critical Review on the Sensing, Control, and Manipulation of Single Molecules on Optofluidic Devices.

Authors:  Mahmudur Rahman; Kazi Rafiqul Islam; Md Rashedul Islam; Md Jahirul Islam; Md Rejvi Kaysir; Masuma Akter; Md Arifur Rahman; S M Mahfuz Alam
Journal:  Micromachines (Basel)       Date:  2022-06-18       Impact factor: 3.523

2.  Purification of kinetochores from the budding yeast Saccharomyces cerevisiae.

Authors:  Amitabha Gupta; Rena K Evans; Lori B Koch; Aimee J Littleton; Sue Biggins
Journal:  Methods Cell Biol       Date:  2018-05-11       Impact factor: 1.441

3.  Fabrication of Zero Mode Waveguides for High Concentration Single Molecule Microscopy.

Authors:  Kevin Y Chen; Ryan M Jamiolkowski; Alyssa M Tate; Shane A Fiorenza; Shawn H Pfeil; Yale E Goldman
Journal:  J Vis Exp       Date:  2020-05-12       Impact factor: 1.424

4.  Rapid quantification of miRNAs using dynamic FRET-FISH.

Authors:  Juyoung Kim; Chanshin Kang; Soochul Shin; Sungchul Hohng
Journal:  Commun Biol       Date:  2022-10-07

Review 5.  Single-molecule fluorescence vistas of how lipids regulate membrane proteins.

Authors:  Alyssa E Ward; Yujie Ye; Jennifer A Schuster; Shushu Wei; Francisco N Barrera
Journal:  Biochem Soc Trans       Date:  2021-08-27       Impact factor: 5.407

Review 6.  Real-Time 3D Single Particle Tracking: Towards Active Feedback Single Molecule Spectroscopy in Live Cells.

Authors:  Shangguo Hou; Courtney Johnson; Kevin Welsher
Journal:  Molecules       Date:  2019-08-02       Impact factor: 4.411

7.  Construction of a Three-Color Prism-Based TIRF Microscope to Study the Interactions and Dynamics of Macromolecules.

Authors:  Max S Fairlamb; Amy M Whitaker; Fletcher E Bain; Maria Spies; Bret D Freudenthal
Journal:  Biology (Basel)       Date:  2021-06-23
  7 in total

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