Literature DB >> 27139033

How to Compute Electron Ionization Mass Spectra from First Principles.

Christoph Alexander Bauer1, Stefan Grimme1.   

Abstract

The prediction of electron ionization (EI) mass spectra (MS) from first principles has been a major challenge for quantum chemistry (QC). The unimolecular reaction space grows rapidly with increasing molecular size. On the one hand, statistical models like Eyring's quasi-equilibrium theory and Rice-Ramsperger-Kassel-Marcus theory have provided valuable insight, and some predictions and quantitative results can be obtained from such calculations. On the other hand, molecular dynamics-based methods are able to explore automatically the energetically available regions of phase space and thus yield reaction paths in an unbiased way. We describe in this feature article the status of both methodologies in relation to mass spectrometry for small to medium sized molecules. We further present results obtained with the QCEIMS program developed in our laboratory. Our method, which incorporates stochastic and dynamic elements, has been a significant step toward the reliable routine calculation of EI mass spectra.

Entities:  

Year:  2016        PMID: 27139033     DOI: 10.1021/acs.jpca.6b02907

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  16 in total

1.  Fragmentation Spectra Prediction and DNA Adducts Structural Determination.

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2.  EMPIRE: a highly parallel semiempirical molecular orbital program: 3: Born-Oppenheimer molecular dynamics.

Authors:  Johannes T Margraf; Matthias Hennemann; Timothy Clark
Journal:  J Mol Model       Date:  2020-02-03       Impact factor: 1.810

3.  Metabolomics as an Emerging Tool in the Search for Astrobiologically Relevant Biomarkers.

Authors:  Lauren Seyler; Elizabeth B Kujawinski; Armando Azua-Bustos; Michael D Lee; Jeffrey Marlow; Scott M Perl; Henderson James Cleaves Ii
Journal:  Astrobiology       Date:  2020-06-17       Impact factor: 4.335

Review 4.  Identification of small molecules using accurate mass MS/MS search.

Authors:  Tobias Kind; Hiroshi Tsugawa; Tomas Cajka; Yan Ma; Zijuan Lai; Sajjan S Mehta; Gert Wohlgemuth; Dinesh Kumar Barupal; Megan R Showalter; Masanori Arita; Oliver Fiehn
Journal:  Mass Spectrom Rev       Date:  2017-04-24       Impact factor: 10.946

5.  Questions in natural products synthesis research that can (and cannot) be answered using computational chemistry.

Authors:  Dean J Tantillo
Journal:  Chem Soc Rev       Date:  2018-10-29       Impact factor: 54.564

6.  High-Throughput Non-targeted Chemical Structure Identification Using Gas-Phase Infrared Spectra.

Authors:  Erandika Karunaratne; Dennis W Hill; Philipp Pracht; José A Gascón; Stefan Grimme; David F Grant
Journal:  Anal Chem       Date:  2021-07-21       Impact factor: 8.008

7.  Dissociative Ionization and Thermal Decomposition of Cyclopentanone.

Authors:  Johan I M Pastoors; Andras Bodi; Patrick Hemberger; Jordy Bouwman
Journal:  Chemistry       Date:  2017-08-31       Impact factor: 5.236

8.  Quantum chemical calculation of electron ionization mass spectra for general organic and inorganic molecules.

Authors:  Vilhjálmur Ásgeirsson; Christoph A Bauer; Stefan Grimme
Journal:  Chem Sci       Date:  2017-05-05       Impact factor: 9.825

Review 9.  A Trajectory-Based Method to Explore Reaction Mechanisms.

Authors:  Saulo A Vázquez; Xose L Otero; Emilio Martinez-Nunez
Journal:  Molecules       Date:  2018-11-30       Impact factor: 4.411

Review 10.  Software Tools and Approaches for Compound Identification of LC-MS/MS Data in Metabolomics.

Authors:  Ivana Blaženović; Tobias Kind; Jian Ji; Oliver Fiehn
Journal:  Metabolites       Date:  2018-05-10
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