Literature DB >> 27138102

Divergent assembly mechanisms of the manganese/iron cofactors in R2lox and R2c proteins.

Yuri Kutin1, Vivek Srinivas2, Matthieu Fritz2, Ramona Kositzki3, Hannah S Shafaat1, James Birrell1, Eckhard Bill1, Michael Haumann3, Wolfgang Lubitz1, Martin Högbom4, Julia J Griese5, Nicholas Cox6.   

Abstract

A manganese/iron cofactor which performs multi-electron oxidative chemistry is found in two classes of ferritin-like proteins, the small subunit (R2) of class Ic ribonucleotide reductase (R2c) and the R2-like ligand-binding oxidase (R2lox). It is unclear how a heterodimeric Mn/Fe metallocofactor is assembled in these two related proteins as opposed to a homodimeric Fe/Fe cofactor, especially considering the structural similarity and proximity of the two metal-binding sites in both protein scaffolds and the similar first coordination sphere ligand preferences of MnII and FeII. Using EPR and Mössbauer spectroscopies as well as X-ray anomalous dispersion, we examined metal loading and cofactor activation of both proteins in vitro (in solution). We find divergent cofactor assembly mechanisms for the two systems. In both cases, excess MnII promotes heterobimetallic cofactor assembly. In the absence of FeII, R2c cooperatively binds MnII at both metal sites, whereas R2lox does not readily bind MnII at either site. Heterometallic cofactor assembly is favored at substoichiometric FeII concentrations in R2lox. FeII and MnII likely bind to the protein in a stepwise fashion, with FeII binding to site 2 initiating cofactor assembly. In R2c, however, heterometallic assembly is presumably achieved by the displacement of MnII by FeII at site 2. The divergent metal loading mechanisms are correlated with the putative in vivo functions of R2c and R2lox, and most likely with the intracellular MnII/FeII concentrations in the host organisms from which they were isolated.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Di-metal carboxylate protein; EPR spectroscopy; Ferritin; Mössbauer spectroscopy; Ribonucleotide reductase; X-ray crystallography

Mesh:

Substances:

Year:  2016        PMID: 27138102     DOI: 10.1016/j.jinorgbio.2016.04.019

Source DB:  PubMed          Journal:  J Inorg Biochem        ISSN: 0162-0134            Impact factor:   4.155


  11 in total

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Authors:  Andrew J Jasniewski; Lawrence Que
Journal:  Chem Rev       Date:  2018-02-05       Impact factor: 60.622

2.  Chemical flexibility of heterobimetallic Mn/Fe cofactors: R2lox and R2c proteins.

Authors:  Yury Kutin; Ramona Kositzki; Rui M M Branca; Vivek Srinivas; Daniel Lundin; Michael Haumann; Martin Högbom; Nicholas Cox; Julia J Griese
Journal:  J Biol Chem       Date:  2019-10-07       Impact factor: 5.157

3.  Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers.

Authors:  Franklin D Fuller; Sheraz Gul; Ruchira Chatterjee; E Sethe Burgie; Iris D Young; Hugo Lebrette; Vivek Srinivas; Aaron S Brewster; Tara Michels-Clark; Jonathan A Clinger; Babak Andi; Mohamed Ibrahim; Ernest Pastor; Casper de Lichtenberg; Rana Hussein; Christopher J Pollock; Miao Zhang; Claudiu A Stan; Thomas Kroll; Thomas Fransson; Clemens Weninger; Markus Kubin; Pierre Aller; Louise Lassalle; Philipp Bräuer; Mitchell D Miller; Muhamed Amin; Sergey Koroidov; Christian G Roessler; Marc Allaire; Raymond G Sierra; Peter T Docker; James M Glownia; Silke Nelson; Jason E Koglin; Diling Zhu; Matthieu Chollet; Sanghoon Song; Henrik Lemke; Mengning Liang; Dimosthenis Sokaras; Roberto Alonso-Mori; Athina Zouni; Johannes Messinger; Uwe Bergmann; Amie K Boal; J Martin Bollinger; Carsten Krebs; Martin Högbom; George N Phillips; Richard D Vierstra; Nicholas K Sauter; Allen M Orville; Jan Kern; Vittal K Yachandra; Junko Yano
Journal:  Nat Methods       Date:  2017-02-27       Impact factor: 28.547

4.  Pulsed Multifrequency Electron Paramagnetic Resonance Spectroscopy Reveals Key Branch Points for One- vs Two-Electron Reactivity in Mn/Fe Proteins.

Authors:  Effie C Kisgeropoulos; Yunqiao J Gan; Samuel M Greer; Joseph M Hazel; Hannah S Shafaat
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5.  Key Structural Motifs Balance Metal Binding and Oxidative Reactivity in a Heterobimetallic Mn/Fe Protein.

Authors:  Effie C Kisgeropoulos; Julia J Griese; Zachary R Smith; Rui M M Branca; Camille R Schneider; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2020-03-09       Impact factor: 15.419

6.  Driving Protein Conformational Changes with Light: Photoinduced Structural Rearrangement in a Heterobimetallic Oxidase.

Authors:  Pearson T Maugeri; Julia J Griese; Rui M Branca; Effie K Miller; Zachary R Smith; Jürgen Eirich; Martin Högbom; Hannah S Shafaat
Journal:  J Am Chem Soc       Date:  2018-01-22       Impact factor: 15.419

7.  Time-Resolved Investigations of Heterobimetallic Cofactor Assembly in R2lox Reveal Distinct Mn/Fe Intermediates.

Authors:  Effie K Miller; Nicholas E Trivelas; Pearson T Maugeri; Elizabeth J Blaesi; Hannah S Shafaat
Journal:  Biochemistry       Date:  2017-06-16       Impact factor: 3.162

8.  Ether cross-link formation in the R2-like ligand-binding oxidase.

Authors:  Julia J Griese; Rui M M Branca; Vivek Srinivas; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2018-06-26       Impact factor: 3.358

9.  Assembly of a heterodinuclear Mn/Fe cofactor is coupled to tyrosine-valine ether cross-link formation in the R2-like ligand-binding oxidase.

Authors:  Julia J Griese; Ramona Kositzki; Michael Haumann; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2019-01-28       Impact factor: 3.358

10.  The Bacillus anthracis class Ib ribonucleotide reductase subunit NrdF intrinsically selects manganese over iron.

Authors:  Kristīne Grāve; Julia J Griese; Gustav Berggren; Matthew D Bennett; Martin Högbom
Journal:  J Biol Inorg Chem       Date:  2020-04-15       Impact factor: 3.358

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