Literature DB >> 27121024

On the lack of evolutionary continuity between prebiotic peptides and extant enzymes.

Luciana Raggi1, Jeffrey L Bada2, Antonio Lazcano1.   

Abstract

The significance of experiments that claim to simulate the properties of prebiotic small peptides and polypeptides as models of the polymers that may have preceded proteins is critically addressed. As discussed here, most of these experiments are based only on a small number of a larger set of amino acids that may have been present in the prebiotic environment, supported by both experimental simulations and the repertoire of organic compounds reported in carbonaceous chondrites. Model experiments with small peptides may offer some insights into the processes that contributed to generate the chemical environment leading to the emergence of informational oligomers, but not to the origin of proteins. The large body of circumstantial evidence indicating that catalytic RNA played a key role in the origin of protein synthesis during the early stages of cellular evolution implies that the emergence of the genetic code and of protein biosynthesis are no longer synonymous with the origin of life. Hence, reports on the abiotic synthesis of small catalytic peptides under potential prebiotic conditions do not provide information on the origin of triplet encoded protein biosynthesis, but in some cases may serve as models to understand the properties of the earliest proteins.

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Year:  2016        PMID: 27121024     DOI: 10.1039/c6cp00793g

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  10 in total

1.  Surveying the sequence diversity of model prebiotic peptides by mass spectrometry.

Authors:  Jay G Forsythe; Anton S Petrov; W Calvin Millar; Sheng-Sheng Yu; Ramanarayanan Krishnamurthy; Martha A Grover; Nicholas V Hud; Facundo M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-28       Impact factor: 11.205

2.  Can an Imidazole Be Formed from an Alanyl-Seryl-Glycine Tripeptide under Possible Prebiotic Conditions?

Authors:  Alberto Vázquez-Salazar; George Tan; Amanda Stockton; Renato Fani; Arturo Becerra; Antonio Lazcano
Journal:  Orig Life Evol Biosph       Date:  2016-10-22       Impact factor: 1.950

3.  Modern and prebiotic amino acids support distinct structural profiles in proteins.

Authors:  Vyacheslav Tretyachenko; Jiří Vymětal; Tereza Neuwirthová; Jiří Vondrášek; Kosuke Fujishima; Klára Hlouchová
Journal:  Open Biol       Date:  2022-06-22       Impact factor: 7.124

4.  Water-Based Dynamic Depsipeptide Chemistry: Building Block Recycling and Oligomer Distribution Control Using Hydration-Dehydration Cycles.

Authors:  Martin C; Moran Frenkel-Pinter; Kelvin H Smith; Victor F Rivera-Santana; Alyssa B Sargon; Kaitlin C Jacobson; Aikomari Guzman-Martinez; Loren Dean Williams; Luke J Leman; Charles L Liotta; Martha A Grover; Nicholas V Hud
Journal:  JACS Au       Date:  2022-05-17

5.  Flexible Proteins at the Origin of Life.

Authors:  Andrew Pohorille; Michael A Wilson; Gareth Shannon
Journal:  Life (Basel)       Date:  2017-06-05

Review 6.  Progress in synthesizing protocells.

Authors:  O Duhan Toparlak; Sheref S Mansy
Journal:  Exp Biol Med (Maywood)       Date:  2018-12-03

7.  In Vitro Evolution Reveals Noncationic Protein-RNA Interaction Mediated by Metal Ions.

Authors:  Valerio G Giacobelli; Kosuke Fujishima; Martin Lepšík; Vyacheslav Tretyachenko; Tereza Kadavá; Mikhail Makarov; Lucie Bednárová; Petr Novák; Klára Hlouchová
Journal:  Mol Biol Evol       Date:  2022-03-02       Impact factor: 16.240

Review 8.  Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids.

Authors:  Stephen D Fried; Kosuke Fujishima; Mikhail Makarov; Ivan Cherepashuk; Klara Hlouchova
Journal:  J R Soc Interface       Date:  2022-02-09       Impact factor: 4.118

Review 9.  A Self-Assembled Aggregate Composed of a Fatty Acid Membrane and the Building Blocks of Biological Polymers Provides a First Step in the Emergence of Protocells.

Authors:  Roy A Black; Matthew C Blosser
Journal:  Life (Basel)       Date:  2016-08-11

10.  Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines.

Authors:  Alberto Vázquez-Salazar; Arturo Becerra; Antonio Lazcano
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

  10 in total

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