Literature DB >> 27771860

Can an Imidazole Be Formed from an Alanyl-Seryl-Glycine Tripeptide under Possible Prebiotic Conditions?

Alberto Vázquez-Salazar1, George Tan2, Amanda Stockton2, Renato Fani3, Arturo Becerra1, Antonio Lazcano4,5.   

Abstract

The five-membered heterocyclic imidazole group, which is an essential component of purines, histidine and many cofactors, has been abiotically synthesized in different model experiments that attempt to simulate the prebiotic environment. The evolutionary significance of imidazoles is highlighted not only by its presence in nucleic acid components and in histidine, but also by experimental reports of its ability to restore the catalytic activity of ribozymes. However, as of today there are no reports of histidine in carbonaceous chondrites, and although the abiotic synthesis of His reported by Shen et al. (1987, 1990a) proceeds via an Amadori rearrangement, like in the biosynthesis of histidine, neither the reactants nor the conditions are truly prebiotic. Based on the autocatalytic biosynthesis of 4-methylidene-imidazole-one (MIO), a cofactor of some members of the amino acid aromatic ammonia-lyases and aminomutases, which occur via the self-condensation of a simple Ala-Ser-Gly motif within the sequence of the enzymes, we propose a possible prebiotic synthesis of an imidazolide.

Entities:  

Keywords:  Evolution of catalysis; Imidazole group; Prebiotic evolution; Prebiotic synthesis of imidazolides

Mesh:

Substances:

Year:  2016        PMID: 27771860     DOI: 10.1007/s11084-016-9525-y

Source DB:  PubMed          Journal:  Orig Life Evol Biosph        ISSN: 0169-6149            Impact factor:   1.950


  46 in total

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Authors:  Y Li; Y Zhao; S Hatfield; R Wan; Q Zhu; X Li; M McMills; Y Ma; J Li; K L Brown; C He; F Liu; X Chen
Journal:  Bioorg Med Chem       Date:  2000-12       Impact factor: 3.641

Review 2.  HCN and chemical evolution: the possible role of cyano compounds in prebiotic synthesis.

Authors:  J P Ferris; W J Hagan
Journal:  Tetrahedron       Date:  1984       Impact factor: 2.457

Review 3.  The cyclization of peptides and depsipeptides.

Authors:  John S Davies
Journal:  J Pept Sci       Date:  2003-08       Impact factor: 1.905

4.  An investigation of prebiotic purine synthesis from the hydrolysis of HCN polymers.

Authors:  Eduardo Borquez; H James Cleaves; Antonio Lazcano; Stanley L Miller
Journal:  Orig Life Evol Biosph       Date:  2005-04       Impact factor: 1.950

5.  The evolution of the histidine biosynthetic genes in prokaryotes: a common ancestor for the hisA and hisF genes.

Authors:  R Fani; P Liò; I Chiarelli; M Bazzicalupo
Journal:  J Mol Evol       Date:  1994-05       Impact factor: 2.395

6.  Ser-His catalyses the formation of peptides and PNAs.

Authors:  Maçha Gorlero; Rafal Wieczorek; Katarzyna Adamala; Alessandra Giorgi; Maria Eugenia Schininà; Pasquale Stano; Pier Luigi Luisi
Journal:  FEBS Lett       Date:  2008-12-09       Impact factor: 4.124

Review 7.  Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis.

Authors:  Gemma L Holliday; Julia D Fischer; John B O Mitchell; Janet M Thornton
Journal:  FEBS J       Date:  2011-06-13       Impact factor: 5.542

Review 8.  Simple Organics and Biomonomers Identified in HCN Polymers: An Overview.

Authors:  Marta Ruiz-Bermejo; María-Paz Zorzano; Susana Osuna-Esteban
Journal:  Life (Basel)       Date:  2013-07-29

9.  The role of gene fusions in the evolution of metabolic pathways: the histidine biosynthesis case.

Authors:  Renato Fani; Matteo Brilli; Marco Fondi; Pietro Lió
Journal:  BMC Evol Biol       Date:  2007-08-16       Impact factor: 3.260

10.  Oligoarginine peptides slow strand annealing and assist non-enzymatic RNA replication.

Authors:  Tony Z Jia; Albert C Fahrenbach; Neha P Kamat; Katarzyna P Adamala; Jack W Szostak
Journal:  Nat Chem       Date:  2016-06-27       Impact factor: 24.427

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1.  Reconstruction and Characterization of Thermally Stable and Catalytically Active Proteins Comprising an Alphabet of ~ 13 Amino Acids.

Authors:  Madoka Kimura; Satoshi Akanuma
Journal:  J Mol Evol       Date:  2020-03-23       Impact factor: 2.395

2.  Alarmones as Vestiges of a Bygone RNA World.

Authors:  Ricardo Hernández-Morales; Arturo Becerra; Antonio Lazcano
Journal:  J Mol Evol       Date:  2019-01-02       Impact factor: 2.395

3.  Comprehensive reduction of amino acid set in a protein suggests the importance of prebiotic amino acids for stable proteins.

Authors:  Rei Shibue; Takahiro Sasamoto; Masami Shimada; Bowen Zhang; Akihiko Yamagishi; Satoshi Akanuma
Journal:  Sci Rep       Date:  2018-01-19       Impact factor: 4.379

Review 4.  Small and Random Peptides: An Unexplored Reservoir of Potentially Functional Primitive Organocatalysts. The Case of Seryl-Histidine.

Authors:  Rafal Wieczorek; Katarzyna Adamala; Tecla Gasperi; Fabio Polticelli; Pasquale Stano
Journal:  Life (Basel)       Date:  2017-04-09

5.  Prebiotic Phosphorylation of Uridine using Diamidophosphate in Aerosols.

Authors:  A D Castañeda; Z Li; T Joo; K Benham; B T Burcar; R Krishnamurthy; C L Liotta; N L Ng; T M Orlando
Journal:  Sci Rep       Date:  2019-09-19       Impact factor: 4.379

6.  Transition metals enhance prebiotic depsipeptide oligomerization reactions involving histidine.

Authors:  Moran Frenkel-Pinter; Alyssa B Sargon; Jennifer B Glass; Nicholas V Hud; Loren Dean Williams
Journal:  RSC Adv       Date:  2021-01-18       Impact factor: 3.361

7.  Evolutionary convergence in the biosyntheses of the imidazole moieties of histidine and purines.

Authors:  Alberto Vázquez-Salazar; Arturo Becerra; Antonio Lazcano
Journal:  PLoS One       Date:  2018-04-26       Impact factor: 3.240

  7 in total

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