Literature DB >> 27116965

Rapid method for DNA isolation from a tough cell wall green alga Tetraspora sp. CU2551.

Cherdsak Maneeruttanarungroj1,2, Aran Incharoensakdi3.   

Abstract

Genetic studies are important to understand the complex biological system of various organisms. Some eukaryotic green organisms have tough cell wall which precludes the efficient extraction of the genetic materials. Here, we developed the method for simple and rapid isolation of high quality DNA from a green alga Tetraspora sp. CU2551. The cell homogenization procedures were combined with physical force plus heat treatment to disrupt the cell envelope of Tetraspora sp. CU2551. Without protease treatment, vortexing with glass bead for 30-105 s at 70 °C led to the isolation of a high purity DNA which was suitable for downstream process. The improved method was successfully developed and could be applied for the rapid isolation of DNA from other unicellular and filamentous green microalgal strains.

Entities:  

Keywords:  Green algae; Rapid DNA isolation; Tetraspora

Mesh:

Substances:

Year:  2016        PMID: 27116965     DOI: 10.1007/s11274-016-2055-y

Source DB:  PubMed          Journal:  World J Microbiol Biotechnol        ISSN: 0959-3993            Impact factor:   3.312


  13 in total

1.  Modified CTAB protocol using a silica matrix for isolation of plant genomic DNA.

Authors:  J Huang; X Ge; M Sun
Journal:  Biotechniques       Date:  2000-03       Impact factor: 1.993

2.  Universal and rapid salt-extraction of high quality genomic DNA for PCR-based techniques.

Authors:  S M Aljanabi; I Martinez
Journal:  Nucleic Acids Res       Date:  1997-11-15       Impact factor: 16.971

3.  Effects of the protein denaturant guanidinium chloride on aqueous hydrophobic contact-pair interactions.

Authors:  Ryan D Macdonald; Mazdak Khajehpour
Journal:  Biophys Chem       Date:  2014-09-11       Impact factor: 2.352

4.  Genome analysis of the smallest free-living eukaryote Ostreococcus tauri unveils many unique features.

Authors:  Evelyne Derelle; Conchita Ferraz; Stephane Rombauts; Pierre Rouzé; Alexandra Z Worden; Steven Robbens; Frédéric Partensky; Sven Degroeve; Sophie Echeynié; Richard Cooke; Yvan Saeys; Jan Wuyts; Kamel Jabbari; Chris Bowler; Olivier Panaud; Benoît Piégu; Steven G Ball; Jean-Philippe Ral; François-Yves Bouget; Gwenael Piganeau; Bernard De Baets; André Picard; Michel Delseny; Jacques Demaille; Yves Van de Peer; Hervé Moreau
Journal:  Proc Natl Acad Sci U S A       Date:  2006-07-25       Impact factor: 11.205

5.  UV radiation-induced accumulation of photoprotective compounds in the green alga Tetraspora sp. CU2551.

Authors:  Rajesh P Rastogi; Aran Incharoensakdi
Journal:  Plant Physiol Biochem       Date:  2013-05-17       Impact factor: 4.270

6.  The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Authors:  Sabeeha S Merchant; Simon E Prochnik; Olivier Vallon; Elizabeth H Harris; Steven J Karpowicz; George B Witman; Astrid Terry; Asaf Salamov; Lillian K Fritz-Laylin; Laurence Maréchal-Drouard; Wallace F Marshall; Liang-Hu Qu; David R Nelson; Anton A Sanderfoot; Martin H Spalding; Vladimir V Kapitonov; Qinghu Ren; Patrick Ferris; Erika Lindquist; Harris Shapiro; Susan M Lucas; Jane Grimwood; Jeremy Schmutz; Pierre Cardol; Heriberto Cerutti; Guillaume Chanfreau; Chun-Long Chen; Valérie Cognat; Martin T Croft; Rachel Dent; Susan Dutcher; Emilio Fernández; Hideya Fukuzawa; David González-Ballester; Diego González-Halphen; Armin Hallmann; Marc Hanikenne; Michael Hippler; William Inwood; Kamel Jabbari; Ming Kalanon; Richard Kuras; Paul A Lefebvre; Stéphane D Lemaire; Alexey V Lobanov; Martin Lohr; Andrea Manuell; Iris Meier; Laurens Mets; Maria Mittag; Telsa Mittelmeier; James V Moroney; Jeffrey Moseley; Carolyn Napoli; Aurora M Nedelcu; Krishna Niyogi; Sergey V Novoselov; Ian T Paulsen; Greg Pazour; Saul Purton; Jean-Philippe Ral; Diego Mauricio Riaño-Pachón; Wayne Riekhof; Linda Rymarquis; Michael Schroda; David Stern; James Umen; Robert Willows; Nedra Wilson; Sara Lana Zimmer; Jens Allmer; Janneke Balk; Katerina Bisova; Chong-Jian Chen; Marek Elias; Karla Gendler; Charles Hauser; Mary Rose Lamb; Heidi Ledford; Joanne C Long; Jun Minagawa; M Dudley Page; Junmin Pan; Wirulda Pootakham; Sanja Roje; Annkatrin Rose; Eric Stahlberg; Aimee M Terauchi; Pinfen Yang; Steven Ball; Chris Bowler; Carol L Dieckmann; Vadim N Gladyshev; Pamela Green; Richard Jorgensen; Stephen Mayfield; Bernd Mueller-Roeber; Sathish Rajamani; Richard T Sayre; Peter Brokstein; Inna Dubchak; David Goodstein; Leila Hornick; Y Wayne Huang; Jinal Jhaveri; Yigong Luo; Diego Martínez; Wing Chi Abby Ngau; Bobby Otillar; Alexander Poliakov; Aaron Porter; Lukasz Szajkowski; Gregory Werner; Kemin Zhou; Igor V Grigoriev; Daniel S Rokhsar; Arthur R Grossman
Journal:  Science       Date:  2007-10-12       Impact factor: 47.728

7.  High recovery of cell-free methylated DNA based on a rapid bisulfite-treatment protocol.

Authors:  Inge Søkilde Pedersen; Henrik Bygum Krarup; Ole Thorlacius-Ussing; Poul Henning Madsen
Journal:  BMC Mol Biol       Date:  2012-03-26       Impact factor: 2.946

8.  Evaluation of methods for the extraction and purification of DNA from the human microbiome.

Authors:  Sanqing Yuan; Dora B Cohen; Jacques Ravel; Zaid Abdo; Larry J Forney
Journal:  PLoS One       Date:  2012-03-23       Impact factor: 3.240

9.  Analysis of current and alternative phenol based RNA extraction methodologies for cyanobacteria.

Authors:  Fernando Lopes Pinto; Anders Thapper; Wolfgang Sontheim; Peter Lindblad
Journal:  BMC Mol Biol       Date:  2009-08-07       Impact factor: 2.946

10.  A small intergenic region drives exclusive tissue-specific expression of the adjacent genes in Arabidopsis thaliana.

Authors:  Hernán G Bondino; Estela M Valle
Journal:  BMC Mol Biol       Date:  2009-10-16       Impact factor: 2.946

View more
  1 in total

1.  An optimized method for high quality DNA extraction from microalga Prototheca wickerhamii for genome sequencing.

Authors:  Tomasz Jagielski; Jan Gawor; Zofia Bakuła; Karolina Zuchniewicz; Iwona Żak; Robert Gromadka
Journal:  Plant Methods       Date:  2017-10-03       Impact factor: 4.993

  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.