Literature DB >> 17932292

The Chlamydomonas genome reveals the evolution of key animal and plant functions.

Sabeeha S Merchant1, Simon E Prochnik, Olivier Vallon, Elizabeth H Harris, Steven J Karpowicz, George B Witman, Astrid Terry, Asaf Salamov, Lillian K Fritz-Laylin, Laurence Maréchal-Drouard, Wallace F Marshall, Liang-Hu Qu, David R Nelson, Anton A Sanderfoot, Martin H Spalding, Vladimir V Kapitonov, Qinghu Ren, Patrick Ferris, Erika Lindquist, Harris Shapiro, Susan M Lucas, Jane Grimwood, Jeremy Schmutz, Pierre Cardol, Heriberto Cerutti, Guillaume Chanfreau, Chun-Long Chen, Valérie Cognat, Martin T Croft, Rachel Dent, Susan Dutcher, Emilio Fernández, Hideya Fukuzawa, David González-Ballester, Diego González-Halphen, Armin Hallmann, Marc Hanikenne, Michael Hippler, William Inwood, Kamel Jabbari, Ming Kalanon, Richard Kuras, Paul A Lefebvre, Stéphane D Lemaire, Alexey V Lobanov, Martin Lohr, Andrea Manuell, Iris Meier, Laurens Mets, Maria Mittag, Telsa Mittelmeier, James V Moroney, Jeffrey Moseley, Carolyn Napoli, Aurora M Nedelcu, Krishna Niyogi, Sergey V Novoselov, Ian T Paulsen, Greg Pazour, Saul Purton, Jean-Philippe Ral, Diego Mauricio Riaño-Pachón, Wayne Riekhof, Linda Rymarquis, Michael Schroda, David Stern, James Umen, Robert Willows, Nedra Wilson, Sara Lana Zimmer, Jens Allmer, Janneke Balk, Katerina Bisova, Chong-Jian Chen, Marek Elias, Karla Gendler, Charles Hauser, Mary Rose Lamb, Heidi Ledford, Joanne C Long, Jun Minagawa, M Dudley Page, Junmin Pan, Wirulda Pootakham, Sanja Roje, Annkatrin Rose, Eric Stahlberg, Aimee M Terauchi, Pinfen Yang, Steven Ball, Chris Bowler, Carol L Dieckmann, Vadim N Gladyshev, Pamela Green, Richard Jorgensen, Stephen Mayfield, Bernd Mueller-Roeber, Sathish Rajamani, Richard T Sayre, Peter Brokstein, Inna Dubchak, David Goodstein, Leila Hornick, Y Wayne Huang, Jinal Jhaveri, Yigong Luo, Diego Martínez, Wing Chi Abby Ngau, Bobby Otillar, Alexander Poliakov, Aaron Porter, Lukasz Szajkowski, Gregory Werner, Kemin Zhou, Igor V Grigoriev, Daniel S Rokhsar, Arthur R Grossman.   

Abstract

Chlamydomonas reinhardtii is a unicellular green alga whose lineage diverged from land plants over 1 billion years ago. It is a model system for studying chloroplast-based photosynthesis, as well as the structure, assembly, and function of eukaryotic flagella (cilia), which were inherited from the common ancestor of plants and animals, but lost in land plants. We sequenced the approximately 120-megabase nuclear genome of Chlamydomonas and performed comparative phylogenomic analyses, identifying genes encoding uncharacterized proteins that are likely associated with the function and biogenesis of chloroplasts or eukaryotic flagella. Analyses of the Chlamydomonas genome advance our understanding of the ancestral eukaryotic cell, reveal previously unknown genes associated with photosynthetic and flagellar functions, and establish links between ciliopathy and the composition and function of flagella.

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Year:  2007        PMID: 17932292      PMCID: PMC2875087          DOI: 10.1126/science.1143609

Source DB:  PubMed          Journal:  Science        ISSN: 0036-8075            Impact factor:   47.728


  51 in total

1.  MACRONUTRIENT UTILIZATION BY PHOTOSYNTHETIC EUKARYOTES AND THE FABRIC OF INTERACTIONS.

Authors:  Arthur Grossman; Hideki Takahashi
Journal:  Annu Rev Plant Physiol Plant Mol Biol       Date:  2001-06

Review 2.  Photosynthetic eukaryotes unite: endosymbiosis connects the dots.

Authors:  Debashish Bhattacharya; Hwan Su Yoon; Jeremiah D Hackett
Journal:  Bioessays       Date:  2004-01       Impact factor: 4.345

3.  Decoding cilia function: defining specialized genes required for compartmentalized cilia biogenesis.

Authors:  Tomer Avidor-Reiss; Andreia M Maer; Edmund Koundakjian; Andrey Polyanovsky; Thomas Keil; Shankar Subramaniam; Charles S Zuker
Journal:  Cell       Date:  2004-05-14       Impact factor: 41.582

4.  Dual targeting is the rule for organellar aminoacyl-tRNA synthetases in Arabidopsis thaliana.

Authors:  Anne-Marie Duchêne; Anatoli Giritch; Beate Hoffmann; Valérie Cognat; Dominique Lancelin; Nemo M Peeters; Marlyse Zaepfel; Laurence Maréchal-Drouard; Ian D Small
Journal:  Proc Natl Acad Sci U S A       Date:  2005-10-26       Impact factor: 11.205

5.  Tocopherol cyclase (VTE1) localization and vitamin E accumulation in chloroplast plastoglobule lipoprotein particles.

Authors:  Pierre-Alexandre Vidi; Marion Kanwischer; Sacha Baginsky; Jotham R Austin; Gabor Csucs; Peter Dörmann; Felix Kessler; Claire Bréhélin
Journal:  J Biol Chem       Date:  2006-01-12       Impact factor: 5.157

Review 6.  Novel metabolism in Chlamydomonas through the lens of genomics.

Authors:  Arthur R Grossman; Martin Croft; Vadim N Gladyshev; Sabeeha S Merchant; Matthew C Posewitz; Simon Prochnik; Martin H Spalding
Journal:  Curr Opin Plant Biol       Date:  2007-02-08       Impact factor: 7.834

7.  Convergent evolution of receptors for protein import into mitochondria.

Authors:  Andrew J Perry; Joanne M Hulett; Vladimir A Likić; Trevor Lithgow; Paul R Gooley
Journal:  Curr Biol       Date:  2006-02-07       Impact factor: 10.834

8.  Disruption of the A-kinase anchoring domain in flagellar radial spoke protein 3 results in unregulated axonemal cAMP-dependent protein kinase activity and abnormal flagellar motility.

Authors:  Anne R Gaillard; Laura A Fox; Jeanne M Rhea; Branch Craige; Winfield S Sale
Journal:  Mol Biol Cell       Date:  2006-03-29       Impact factor: 4.138

9.  Eyespot-assembly mutants in Chlamydomonas reinhardtii.

Authors:  M R Lamb; S K Dutcher; C K Worley; C L Dieckmann
Journal:  Genetics       Date:  1999-10       Impact factor: 4.562

10.  The DHC1b (DHC2) isoform of cytoplasmic dynein is required for flagellar assembly.

Authors:  G J Pazour; B L Dickert; G B Witman
Journal:  J Cell Biol       Date:  1999-02-08       Impact factor: 10.539

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  945 in total

1.  The mitochondrial alternative oxidase from Chlamydomonas reinhardtii enables survival in high light.

Authors:  Yuval Kaye; Weichao Huang; Sophie Clowez; Shai Saroussi; Adam Idoine; Emanuel Sanz-Luque; Arthur R Grossman
Journal:  J Biol Chem       Date:  2018-12-03       Impact factor: 5.157

2.  Differential expression of the Chlamydomonas [FeFe]-hydrogenase-encoding HYDA1 gene is regulated by the copper response regulator1.

Authors:  Miriam Pape; Camilla Lambertz; Thomas Happe; Anja Hemschemeier
Journal:  Plant Physiol       Date:  2012-06-05       Impact factor: 8.340

3.  The microalga Chlamydomonas reinhardtii as a platform for the production of human protein therapeutics.

Authors:  Beth A Rasala; Stephen P Mayfield
Journal:  Bioeng Bugs       Date:  2011 Jan-Feb

Review 4.  Integrated control of axonemal dynein AAA(+) motors.

Authors:  Stephen M King
Journal:  J Struct Biol       Date:  2012-03-03       Impact factor: 2.867

5.  Three acyltransferases and nitrogen-responsive regulator are implicated in nitrogen starvation-induced triacylglycerol accumulation in Chlamydomonas.

Authors:  Nanette R Boyle; Mark Dudley Page; Bensheng Liu; Ian K Blaby; David Casero; Janette Kropat; Shawn J Cokus; Anne Hong-Hermesdorf; Johnathan Shaw; Steven J Karpowicz; Sean D Gallaher; Shannon Johnson; Christoph Benning; Matteo Pellegrini; Arthur Grossman; Sabeeha S Merchant
Journal:  J Biol Chem       Date:  2012-03-08       Impact factor: 5.157

6.  The path to triacylglyceride obesity in the sta6 strain of Chlamydomonas reinhardtii.

Authors:  Ursula Goodenough; Ian Blaby; David Casero; Sean D Gallaher; Carrie Goodson; Shannon Johnson; Jae-Hyeok Lee; Sabeeha S Merchant; Matteo Pellegrini; Robyn Roth; Jannette Rusch; Manmilan Singh; James G Umen; Taylor L Weiss; Tuya Wulan
Journal:  Eukaryot Cell       Date:  2014-02-28

7.  A type II NAD(P)H dehydrogenase mediates light-independent plastoquinone reduction in the chloroplast of Chlamydomonas.

Authors:  Frédéric Jans; Emmanuel Mignolet; Pierre-Alain Houyoux; Pierre Cardol; Bart Ghysels; Stéphan Cuiné; Laurent Cournac; Gilles Peltier; Claire Remacle; Fabrice Franck
Journal:  Proc Natl Acad Sci U S A       Date:  2008-12-12       Impact factor: 11.205

8.  Systems-level analysis of nitrogen starvation-induced modifications of carbon metabolism in a Chlamydomonas reinhardtii starchless mutant.

Authors:  Ian K Blaby; Anne G Glaesener; Tabea Mettler; Sorel T Fitz-Gibbon; Sean D Gallaher; Bensheng Liu; Nanette R Boyle; Janette Kropat; Mark Stitt; Shannon Johnson; Christoph Benning; Matteo Pellegrini; David Casero; Sabeeha S Merchant
Journal:  Plant Cell       Date:  2013-11-26       Impact factor: 11.277

9.  C11orf70 Mutations Disrupting the Intraflagellar Transport-Dependent Assembly of Multiple Axonemal Dyneins Cause Primary Ciliary Dyskinesia.

Authors:  Mahmoud R Fassad; Amelia Shoemark; Pierrick le Borgne; France Koll; Mitali Patel; Mellisa Dixon; Jane Hayward; Charlotte Richardson; Emily Frost; Lucy Jenkins; Thomas Cullup; Eddie M K Chung; Michel Lemullois; Anne Aubusson-Fleury; Claire Hogg; David R Mitchell; Anne-Marie Tassin; Hannah M Mitchison
Journal:  Am J Hum Genet       Date:  2018-05-03       Impact factor: 11.025

10.  Enhancement of carotenoid biosynthesis in the green microalga Dunaliella salina with light-emitting diodes and adaptive laboratory evolution.

Authors:  Weiqi Fu; Olafur Guðmundsson; Giuseppe Paglia; Gísli Herjólfsson; Olafur S Andrésson; Bernhard O Palsson; Sigurður Brynjólfsson
Journal:  Appl Microbiol Biotechnol       Date:  2012-10-25       Impact factor: 4.813

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