| Literature DB >> 27115485 |
Scott P Grytdal1, Emilio DeBess2, Lore E Lee2, David Blythe3, Patricia Ryan3, Christianne Biggs3, Miriam Cameron4, Mark Schmidt5, Umesh D Parashar1, Aron J Hall1.
Abstract
Noroviruses and other viral pathogens are increasingly recognized as frequent causes of acute gastroenteritis (AGE). However, few laboratory-based data are available on the incidence of AGE caused by viral pathogens in the U.S. This study examined stool specimens submitted for routine clinical diagnostics from patients enrolled in Kaiser Permanente (KP) health plans in metro Portland, OR, and the Maryland, District of Columbia, and northern Virginia geographic areas to estimate the incidence of viral enteropathogens in these populations. Over a one-year study period, participating laboratories randomly selected stools submitted for routine clinical diagnostics for inclusion in the study along with accompanying demographic and clinical data. Selected stools were tested for norovirus, rotavirus, sapovirus, and astrovirus using standardized real-time RT-PCR protocols. Each KP site provided administrative data which were used in conjunction with previously published data on healthcare utilization to extrapolate pathogen detection rates into population-based incidence rates. A total of 1,099 specimens collected during August 2012 to September 2013 were included. Mean age of patients providing stool specimens was 46 years (range: 0-98 years). Noroviruses were the most common viral pathogen identified among patients with AGE (n = 63 specimens, 6% of specimens tested). In addition, 22 (2%) of specimens were positive for rotavirus; 19 (2%) were positive for sapovirus; and 7 (1%) were positive for astrovirus. Incidence of norovirus-associated outpatient visits was 5.6 per 1,000 person-years; incidence of norovirus disease in the community was estimated to be 69.5 per 1,000 person-years. Norovirus incidence was highest among children <5 years of age (outpatient incidence = 25.6 per 1,000 person-years; community incidence = 152.2 per 1,000 person-years), followed by older adults aged >65 years (outpatient incidence = 7.8 per 1,000 person-years; community incidence = 75.8 per 1,000 person-years). Outpatient incidence rates of rotavirus, sapovirus, and astrovirus were 2.0, 1.6, 0.6 per 1,000 person-years, respectively; community incidence rates for these viruses were 23.4, 22.5, and 8.5 per 1,000 person-years, respectively. This study provides the first age-group specific laboratory-based community and outpatient incidence rates for norovirus AGE in the U.S. Norovirus was the most frequently detected viral enteropathogen across the age spectrum with the highest rates of norovirus disease observed among young children and, to a lesser extent, the elderly. These data provide a better understanding of the norovirus disease burden in the United States, including variations within different age groups, which can help inform the development, targeting, and future impacts of interventions, including vaccines.Entities:
Mesh:
Year: 2016 PMID: 27115485 PMCID: PMC4846013 DOI: 10.1371/journal.pone.0148395
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Fig 1Equations used for calculation of community and outpatient incidence of viral pathogen in patients with acute gastroenteritis (AGE).
Characteristics of randomly selected stool specimens submitted by outpatients, by age group, to Kaiser Permanente Northwest and Mid-Atlantic Health Plans, 2012–2013.
| Stool Specimen Characteristic | Age group, y, no. (%) positive | Total, n = 1099 | |||||
|---|---|---|---|---|---|---|---|
| <5 years, n = 68 | 5–15 years, n = 72 | 16–25 years, n = 98 | 26–45 years, n = 250 | 46–65 years, n = 360 | >65 years, n = 251 | ||
| Tested by bacterial culture | 65 (96) | 70 (97) | 85 (87) | 228 (91) | 333 (93) | 237 (94) | 1018 (93) |
| Tested for C. difficile | 17 (25) | 13 (18) | 45 (46) | 111 (44) | 211 (59) | 155 (62) | 552 (50) |
| Tested for ova and parasites | 18 (26) | 27 (38) | 33 (34) | 82 (33) | 109 (30) | 57 (23) | 326 (30) |
| Total norovirus-positive | 8 (12) | 4 (6) | 4 (6) | 13 (5) | 22 (6) | 12 (5) | 63 (6) |
| Norovirus GI | 1 (13) | 1 (25) | 0 | 3 (23) | 0 | 3 (25) | 8 (13) |
| Norovirus GII | 7 (87) | 3 (75) | 4 (100) | 10 (77) | 22 (100) | 9 (75) | 55 (87) |
| Sapovirus-positive | 1 (1) | 2 (3) | 3 (3) | 5 (2) | 7 (2) | 1 (0.4) | 19 (2) |
| Astrovirus-positive | 1 (1) | 0 | 1 (1) | 2 (1) | 3 (1) | 0 | 7 (1) |
| Rotavirus-positive | 2 (3) | 1 (1) | 1 (1) | 4 (2) | 7 (2) | 7 (3) | 22 (2) |
Fig 2Viral pathogen prevalence in acute gastroenteritis outpatients by season, Kaiser Permanente Northwest and Mid-Atlantic Health Plans, September 2012–August 2013.
Fig 3Estimated community incidence of norovirus AGE among outpatients in Kaiser Permanente Northwest and Mid-Atlantic Health Plans, by age group, 2012–2013.
Fig 4Estimated incidence of norovirus AGE among outpatients in Kaiser Permanente Northwest and Mid-Atlantic Health Plans, by age group, 2012–2013.
Outpatient and community incidence of viral pathogens that cause AGE, by site.
| Virus | Outpatient incidence per 1,000 person-years (95% credible interval) | Community incidence per 1,000 person-years (95% credible interval) | ||||
|---|---|---|---|---|---|---|
| Northwest | Mid-Atlantic | Both Sites | Northwest | Mid-Atlantic | Both Sites | |
| Norovirus | 6.5 (6.0, 7.0) | 4.7 (4.4, 5.2) | 5.6 (5.3, 5.9) | 76.9 (66.3, 90.1) | 61.8 (48.1, 65.8) | 68.9 (57.7, 77.1) |
| Sapovirus | 1.3 (1.2, 1.4) | 2.0 (1.9, 2.3) | 1.6 (1.6, 1.8) | 17.8 (12.9, 17.5) | 28.6 (21.4, 29.2) | 22.7 (17.4, 23.2) |
| Astrovirus | 0.4 (0.3, 0.4) | 0.8 (0.8, 1.0) | 0.6 (0.6, 0.7) | 3.8 (3.7, 5.0) | 12.8 (8.9, 12.2) | 8.5 (6.4, 8.6) |
| Rotavirus | 2.1 (1.8, 2.1) | 1.9 (1.8, 2.1) | 1.9 (1.9, 2.1) | 21.1 (20.3, 27.5) | 26.5 (19.6, 26.8) | 23.7 (20.2, 26.9) |