Literature DB >> 27114037

Whole-Genome Sequencing of a Healthy Aging Cohort.

Galina A Erikson1, Dale L Bodian2, Manuel Rueda1, Bhuvan Molparia1, Erick R Scott1, Ashley A Scott-Van Zeeland3, Sarah E Topol1, Nathan E Wineinger1, John E Niederhuber4, Eric J Topol5, Ali Torkamani6.   

Abstract

Studies of long-lived individuals have revealed few genetic mechanisms for protection against age-associated disease. Therefore, we pursued genome sequencing of a related phenotype-healthy aging-to understand the genetics of disease-free aging without medical intervention. In contrast with studies of exceptional longevity, usually focused on centenarians, healthy aging is not associated with known longevity variants, but is associated with reduced genetic susceptibility to Alzheimer and coronary artery disease. Additionally, healthy aging is not associated with a decreased rate of rare pathogenic variants, potentially indicating the presence of disease-resistance factors. In keeping with this possibility, we identify suggestive common and rare variant genetic associations implying that protection against cognitive decline is a genetic component of healthy aging. These findings, based on a relatively small cohort, require independent replication. Overall, our results suggest healthy aging is an overlapping but distinct phenotype from exceptional longevity that may be enriched with disease-protective genetic factors. VIDEO ABSTRACT.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Mesh:

Year:  2016        PMID: 27114037      PMCID: PMC4860090          DOI: 10.1016/j.cell.2016.03.022

Source DB:  PubMed          Journal:  Cell        ISSN: 0092-8674            Impact factor:   41.582


  56 in total

1.  SNAP: a web-based tool for identification and annotation of proxy SNPs using HapMap.

Authors:  Andrew D Johnson; Robert E Handsaker; Sara L Pulit; Marcia M Nizzari; Christopher J O'Donnell; Paul I W de Bakker
Journal:  Bioinformatics       Date:  2008-10-30       Impact factor: 6.937

2.  Common variants on chromosome 6p22.1 are associated with schizophrenia.

Authors:  Jianxin Shi; Douglas F Levinson; Jubao Duan; Alan R Sanders; Yonglan Zheng; Itsik Pe'er; Frank Dudbridge; Peter A Holmans; Alice S Whittemore; Bryan J Mowry; Ann Olincy; Farooq Amin; C Robert Cloninger; Jeremy M Silverman; Nancy G Buccola; William F Byerley; Donald W Black; Raymond R Crowe; Jorge R Oksenberg; Daniel B Mirel; Kenneth S Kendler; Robert Freedman; Pablo V Gejman
Journal:  Nature       Date:  2009-07-01       Impact factor: 49.962

3.  Association of a functional polymorphism in the cholesteryl ester transfer protein (CETP) gene with memory decline and incidence of dementia.

Authors:  Amy E Sanders; Cuiling Wang; Mindy Katz; Carol A Derby; Nir Barzilai; Laurie Ozelius; Richard B Lipton
Journal:  JAMA       Date:  2010-01-13       Impact factor: 56.272

4.  Temporal Trends in Mortality in the United States, 1969-2013.

Authors:  Jiemin Ma; Elizabeth M Ward; Rebecca L Siegel; Ahmedin Jemal
Journal:  JAMA       Date:  2015-10-27       Impact factor: 56.272

5.  Fast computation and applications of genome mappability.

Authors:  Thomas Derrien; Jordi Estellé; Santiago Marco Sola; David G Knowles; Emanuele Raineri; Roderic Guigó; Paolo Ribeca
Journal:  PLoS One       Date:  2012-01-19       Impact factor: 3.240

6.  Scripps Genome ADVISER: Annotation and Distributed Variant Interpretation SERver.

Authors:  Phillip H Pham; William J Shipman; Galina A Erikson; Nicholas J Schork; Ali Torkamani
Journal:  PLoS One       Date:  2015-02-23       Impact factor: 3.240

7.  A new GWAS and meta-analysis with 1000Genomes imputation identifies novel risk variants for colorectal cancer.

Authors:  Nada A Al-Tassan; Nicola Whiffin; Fay J Hosking; Claire Palles; Susan M Farrington; Sara E Dobbins; Rebecca Harris; Maggie Gorman; Albert Tenesa; Brian F Meyer; Salma M Wakil; Ben Kinnersley; Harry Campbell; Lynn Martin; Christopher G Smith; Shelley Idziaszczyk; Ella Barclay; Timothy S Maughan; Richard Kaplan; Rachel Kerr; David Kerr; Daniel D Buchanan; Daniel D Buchannan; Aung Ko Win; John Hopper; Mark Jenkins; Noralane M Lindor; Polly A Newcomb; Steve Gallinger; David Conti; Fred Schumacher; Graham Casey; Malcolm G Dunlop; Ian P Tomlinson; Jeremy P Cheadle; Richard S Houlston
Journal:  Sci Rep       Date:  2015-05-20       Impact factor: 4.379

8.  Analysis of 6,515 exomes reveals the recent origin of most human protein-coding variants.

Authors:  Wenqing Fu; Timothy D O'Connor; Goo Jun; Hyun Min Kang; Goncalo Abecasis; Suzanne M Leal; Stacey Gabriel; Mark J Rieder; David Altshuler; Jay Shendure; Deborah A Nickerson; Michael J Bamshad; Joshua M Akey
Journal:  Nature       Date:  2012-11-28       Impact factor: 49.962

9.  Genome-Wide Scan Informed by Age-Related Disease Identifies Loci for Exceptional Human Longevity.

Authors:  Kristen Fortney; Edgar Dobriban; Paolo Garagnani; Chiara Pirazzini; Daniela Monti; Daniela Mari; Gil Atzmon; Nir Barzilai; Claudio Franceschi; Art B Owen; Stuart K Kim
Journal:  PLoS Genet       Date:  2015-12-17       Impact factor: 5.917

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

View more
  83 in total

1.  Genome-wide Profiling Identifies DNA Methylation Signatures of Aging in Rod Photoreceptors Associated with Alterations in Energy Metabolism.

Authors:  Ximena Corso-Díaz; James Gentry; Ryan Rebernick; Catherine Jaeger; Matthew J Brooks; Freekje van Asten; Keshav Kooragayala; Linn Gieser; Jacob Nellissery; Raul Covian; Tiziana Cogliati; Anupam K Mondal; Ke Jiang; Anand Swaroop
Journal:  Cell Rep       Date:  2020-04-21       Impact factor: 9.423

2.  Combined Inflammation and Metabolism Biomarker Indices of Robust and Impaired Physical Function in Older Adults.

Authors:  Xintong Zuo; Alison Luciano; Carl F Pieper; James R Bain; Virginia B Kraus; William E Kraus; Miriam C Morey; Harvey J Cohen
Journal:  J Am Geriatr Soc       Date:  2018-05-08       Impact factor: 5.562

3.  IGF1 Shapes Macrophage Activation in Response to Immunometabolic Challenge.

Authors:  Olga Spadaro; Christina D Camell; Lidia Bosurgi; Kim Y Nguyen; Yun-Hee Youm; Carla V Rothlin; Vishwa Deep Dixit
Journal:  Cell Rep       Date:  2017-04-11       Impact factor: 9.423

Review 4.  Limitations and risks of meta-analyses of longevity studies.

Authors:  Paola Sebastiani; Harold Bae; Anastasia Gurinovich; Mette Soerensen; Annibale Puca; Thomas T Perls
Journal:  Mech Ageing Dev       Date:  2017-01-28       Impact factor: 5.432

Review 5.  Taking Systems Medicine to Heart.

Authors:  Kalliopi Trachana; Rhishikesh Bargaje; Gustavo Glusman; Nathan D Price; Sui Huang; Leroy E Hood
Journal:  Circ Res       Date:  2018-04-27       Impact factor: 17.367

Review 6.  Genetic and epigenetic regulation of human aging and longevity.

Authors:  Brian J Morris; Bradley J Willcox; Timothy A Donlon
Journal:  Biochim Biophys Acta Mol Basis Dis       Date:  2018-09-01       Impact factor: 5.187

7.  Anemia and adverse outcomes in the elderly: a detrimental inflammatory loop?

Authors:  Domenico Girelli; Fabiana Busti
Journal:  Haematologica       Date:  2019-03       Impact factor: 9.941

Review 8.  From Peas to Disease: Modifier Genes, Network Resilience, and the Genetics of Health.

Authors:  Jesse D Riordan; Joseph H Nadeau
Journal:  Am J Hum Genet       Date:  2017-08-03       Impact factor: 11.025

9.  Four Genome-Wide Association Studies Identify New Extreme Longevity Variants.

Authors:  Paola Sebastiani; Anastasia Gurinovich; Harold Bae; Stacy Andersen; Alberto Malovini; Gil Atzmon; Francesco Villa; Aldi T Kraja; Danny Ben-Avraham; Nir Barzilai; Annibale Puca; Thomas T Perls
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2017-10-12       Impact factor: 6.053

10.  Whole-Exome Sequencing of an Exceptional Longevity Cohort.

Authors:  Haakon B Nygaard; E Zeynep Erson-Omay; Xiujuan Wu; Brianne A Kent; Cecily Q Bernales; Daniel M Evans; Matthew J Farrer; Carles Vilariño-Güell; Stephen M Strittmatter
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2019-08-16       Impact factor: 6.053

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.