Literature DB >> 29750252

Whole-Exome Sequencing of an Exceptional Longevity Cohort.

Haakon B Nygaard1, E Zeynep Erson-Omay2, Xiujuan Wu1, Brianne A Kent1, Cecily Q Bernales3, Daniel M Evans3, Matthew J Farrer3, Carles Vilariño-Güell3, Stephen M Strittmatter4.   

Abstract

Centenarians represent a unique cohort to study the genetic basis for longevity and factors determining the risk of neurodegenerative disorders, including Alzheimer's disease (AD). The estimated genetic contribution to longevity is highest in centenarians and super-cententenarians, but few genetic variants have been shown to clearly impact this phenotype. While the genetic risk for AD and other dementias is now well understood, the frequency of known dementia risk variants in centenarians is not fully characterized. To address these questions, we performed whole-exome sequencing on 100 individuals of 98-108 years age in search of genes with large effect sizes towards the exceptional aging phenotype. Overall, we were unable to identify a rare protein-altering variant or individual genes with an increased burden of rare variants associated with exceptional longevity. Gene burden analysis revealed three genes of nominal statistical significance associated with extreme aging, including LYST, MDN1, and RBMXL1. Several genes with variants conferring an increased risk for AD and other dementias were identified, including TREM2, EPHA1, ABCA7, PLD3, MAPT, and NOTCH3. Larger centenarian studies will be required to further elucidate the genetic basis for longevity, and factors conferring protection against age-dependent neurodegenerative syndromes.
© The Author(s) 2018. Published by Oxford University Press on behalf of The Gerontological Society of America. All rights reserved. For permissions, please e-mail: journals.permissions@oup.com.

Entities:  

Keywords:  Alzheimer’s disease; Centenarian; Dementia; SKAT; Whole-exome sequencing

Year:  2019        PMID: 29750252      PMCID: PMC6696723          DOI: 10.1093/gerona/gly098

Source DB:  PubMed          Journal:  J Gerontol A Biol Sci Med Sci        ISSN: 1079-5006            Impact factor:   6.053


  28 in total

1.  The Georgia Centenarian Study.

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2.  Four Genome-Wide Association Studies Identify New Extreme Longevity Variants.

Authors:  Paola Sebastiani; Anastasia Gurinovich; Harold Bae; Stacy Andersen; Alberto Malovini; Gil Atzmon; Francesco Villa; Aldi T Kraja; Danny Ben-Avraham; Nir Barzilai; Annibale Puca; Thomas T Perls
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2017-10-12       Impact factor: 6.053

3.  Effects of FOXO3 Polymorphisms on Survival to Extreme Longevity in Four Centenarian Studies.

Authors:  Harold Bae; Anastasia Gurinovich; Alberto Malovini; Gil Atzmon; Stacy L Andersen; Francesco Villa; Nir Barzilai; Annibale Puca; Thomas T Perls; Paola Sebastiani
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2018-10-08       Impact factor: 6.053

4.  The GBA variant E326K is associated with Parkinson's disease and explains a genome-wide association signal.

Authors:  Victoria Berge-Seidl; Lasse Pihlstrøm; Jodi Maple-Grødem; Lars Forsgren; Jan Linder; Jan Petter Larsen; Ole-Bjørn Tysnes; Mathias Toft
Journal:  Neurosci Lett       Date:  2017-08-19       Impact factor: 3.046

5.  Rare coding variants in the phospholipase D3 gene confer risk for Alzheimer's disease.

Authors:  Celeste M Karch; Sheng Chih Jin; Carlos Cruchaga; Bruno A Benitez; Yefei Cai; Rita Guerreiro; Oscar Harari; Joanne Norton; John Budde; Sarah Bertelsen; Amanda T Jeng; Breanna Cooper; Tara Skorupa; David Carrell; Denise Levitch; Simon Hsu; Jiyoon Choi; Mina Ryten; Celeste Sassi; Jose Bras; Raphael J Gibbs; Dena G Hernandez; Michelle K Lupton; John Powell; Paola Forabosco; Perry G Ridge; Christopher D Corcoran; JoAnn T Tschanz; Maria C Norton; Ronald G Munger; Cameron Schmutz; Maegan Leary; F Yesim Demirci; Mikhil N Bamne; Xingbin Wang; Oscar L Lopez; Mary Ganguli; Christopher Medway; James Turton; Jenny Lord; Anne Braae; Imelda Barber; Kristelle Brown; Pau Pastor; Oswaldo Lorenzo-Betancor; Zoran Brkanac; Erick Scott; Eric Topol; Kevin Morgan; Ekaterina Rogaeva; Andy Singleton; John Hardy; M Ilyas Kamboh; Peter St George-Hyslop; Nigel Cairns; John C Morris; John S K Kauwe; Alison M Goate
Journal:  Nature       Date:  2013-12-11       Impact factor: 49.962

6.  Rare coding mutations identified by sequencing of Alzheimer disease genome-wide association studies loci.

Authors:  Badri N Vardarajan; Mahdi Ghani; Amanda Kahn; Stephanie Sheikh; Christine Sato; Sandra Barral; Joseph H Lee; Rong Cheng; Christiane Reitz; Rafael Lantigua; Dolly Reyes-Dumeyer; Martin Medrano; Ivonne Z Jimenez-Velazquez; Ekaterina Rogaeva; Peter St George-Hyslop; Richard Mayeux
Journal:  Ann Neurol       Date:  2015-07-28       Impact factor: 10.422

7.  Whole-genome sequencing of the world's oldest people.

Authors:  Hinco J Gierman; Kristen Fortney; Jared C Roach; Natalie S Coles; Hong Li; Gustavo Glusman; Glenn J Markov; Justin D Smith; Leroy Hood; L Stephen Coles; Stuart K Kim
Journal:  PLoS One       Date:  2014-11-12       Impact factor: 3.240

8.  EthSEQ: ethnicity annotation from whole exome sequencing data.

Authors:  Alessandro Romanel; Tuo Zhang; Olivier Elemento; Francesca Demichelis
Journal:  Bioinformatics       Date:  2017-08-01       Impact factor: 6.937

9.  Exome-wide Association Study Identifies CLEC3B Missense Variant p.S106G as Being Associated With Extreme Longevity in East Asian Populations.

Authors:  Kumpei Tanisawa; Yasumichi Arai; Nobuyoshi Hirose; Hiroshi Shimokata; Yoshiji Yamada; Hisashi Kawai; Motonaga Kojima; Shuichi Obuchi; Hirohiko Hirano; Hideyo Yoshida; Hiroyuki Suzuki; Yoshinori Fujiwara; Kazushige Ihara; Maki Sugaya; Tomio Arai; Seijiro Mori; Motoji Sawabe; Noriko Sato; Masaaki Muramatsu; Mitsuru Higuchi; Yao-Wen Liu; Qing-Peng Kong; Masashi Tanaka
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2017-03-01       Impact factor: 6.053

10.  Genome-Wide Scan Informed by Age-Related Disease Identifies Loci for Exceptional Human Longevity.

Authors:  Kristen Fortney; Edgar Dobriban; Paolo Garagnani; Chiara Pirazzini; Daniela Monti; Daniela Mari; Gil Atzmon; Nir Barzilai; Claudio Franceschi; Art B Owen; Stuart K Kim
Journal:  PLoS Genet       Date:  2015-12-17       Impact factor: 5.917

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  5 in total

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Authors:  Zhengdong D Zhang; Sofiya Milman; Jhih-Rong Lin; Shayne Wierbowski; Haiyuan Yu; Nir Barzilai; Vera Gorbunova; Warren C Ladiges; Laura J Niedernhofer; Yousin Suh; Paul D Robbins; Jan Vijg
Journal:  Nat Metab       Date:  2020-07-27

2.  Regenerative Medicine and the Biology of Aging.

Authors:  Joshua M Hare; Isabel Beerman
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2019-08-16       Impact factor: 6.053

3.  Quantification and characterization of the 5' exonuclease activity of the lysosomal nuclease PLD3 by a novel cell-based assay.

Authors:  Cedric Cappel; Adriana Carolina Gonzalez; Markus Damme
Journal:  J Biol Chem       Date:  2020-12-10       Impact factor: 5.157

4.  Exome-Wide Association Study Identifies FN3KRP and PGP as New Candidate Longevity Genes.

Authors:  Guillermo G Torres; Marianne Nygaard; Amke Caliebe; Hélène Blanché; Sophie Chantalat; Pilar Galan; Wolfgang Lieb; Lene Christiansen; Jean-François Deleuze; Kaare Christensen; Konstantin Strauch; Martina Müller-Nurasyid; Annette Peters; Markus M Nöthen; Per Hoffmann; Friederike Flachsbart; Stefan Schreiber; David Ellinghaus; Andre Franke; Janina Dose; Almut Nebel
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2021-04-30       Impact factor: 6.053

5.  From mutation to mechanism: deciphering the molecular function of genetic variants linked to human ageing.

Authors:  Maarouf Baghdadi; Helena M Hinterding; Linda Partridge; Joris Deelen
Journal:  Brief Funct Genomics       Date:  2022-01-25       Impact factor: 4.241

  5 in total

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