Literature DB >> 27110194

Phylogenetic analysis of the Australian trans-Bass Strait millipede genus Pogonosternum (Carl, 1912) (Diplopoda, Polydesmida, Paradoxosomatidae) indicates multiple glacial refugia in southeastern Australia.

Peter Decker1.   

Abstract

This study documents the first detailed phylogenetic analysis of an Australian paradoxosomatid millipede genus. Two mitochondrial genes (partial COI and 16S) as well as partial nuclear 28S rDNA were amplified and sequenced for 41 individuals of the southeastern Australian genus Pogonosternum Jeekel, 1965. The analysis indicates that five species groups of Pogonosternum occur across New South Wales, Victoria and Tasmania: Pogonosternum nigrovirgatum (Carl, 1912), Pogonosternum adrianae Jeekel, 1982, Pogonosternum laetificum Jeekel, 1982 and two undescribed species. Pogonosternum coniferum (Jeekel, 1965) specimens cluster within Pogonosternum nigrovirgatum. Most of these five species groups exhibit a pattern of high intraspecific genetic variability and highly localized haplotypes, suggesting that they were confined to multiple Pleistocene refugia on the southeastern Australian mainland. The phylogenetic data also show that northwestern Tasmania was colonized by Pogonosternum nigrovirgatum, probably from central Victoria, and northeastern Tasmania by an as yet undescribed species from eastern Victoria.

Entities:  

Keywords:  16S; 28S; COI; Invertebrate; genetic variability

Year:  2016        PMID: 27110194      PMCID: PMC4829959          DOI: 10.3897/zookeys.578.8052

Source DB:  PubMed          Journal:  Zookeys        ISSN: 1313-2970            Impact factor:   1.546


Introduction

Jeekel, 1965 is the most widespread and species-rich genus of the millipede tribe Brölemann, 1916 in Victoria, with the five described species (Carl, 1902), Jeekel, 1965, Jeekel, 1982, Jeekel, 1982 and the subspecies Jeekel, 1982, all hitherto recorded from Victoria only. However, Jeekel (1982) and Mesibov and Churchill (2003) have recorded undescribed species from Tasmania, and Car (2010) listed two undescribed species from New South Wales. Thus, occurs on both sides of Bass Strait, which separates mainland Australia from Tasmania. The paradoxosomatid genus Chamberlin, 1920 also has a trans-Bass Strait distribution (Jeekel 2006), as do the paradoxosomatid species Jeekel, 1982 and Chamberlin, 1920 (Mesibov 2014). Many soil invertebrates, including millipedes, have limited active dispersal capabilities. Phylogenetic studies of southeastern Australian soil invertebrates can give important insights into the impact of glacial periods during the Pleistocene (Byrne 2008, Endo et al. 2014, Garrick et al. 2004, Schultz et al. 2009, Sunnucks et al. 2006) and assist in identifying biogeographic barriers (Chapple et al. 2011). Unfortunately, phylogenetic studies of Australian millipedes are rare and restricted to a few taxa from a small number of localities (Adams and Humphreys 1993, Nistelberger et al. 2014, Wojcieszek and Simmons 2012). For the australiosomatine species (Brölemann, 1913) from the Australian Alps a hypothesis of multiple glacial refugia has been proposed (Endo et al. 2014) to explain the results of such studies. Similarly, the australiosomatine genus in South Australia was found to have high morphological and genetic variability within species was discovered: it seems probable that isolation in multiple glacial refugia during the Pleistocene was the evolutionary driving force for this variability (Decker 2016). The present study documents a molecular phylogenetic analysis of the antichiropodine genus , using specimens from across the genus range, and with molecular evidence indicating past isolation in multiple Pleistocene refugia. Finally, the identity and origin of Tasmanian populations are clarified.

Material and methods

Specimen collecting and preservation

specimens were collected by hand in Victoria and New South Wales in August 2014 by the author, Karin Voigtländer and Robert Mesibov, and by Mesibov in Tasmania in May 2014 and May 2015 (Fig. 1). Most sites were searched for 1-5 hours with the aim of finding 1-3 adult males. At only a few localities were PageBreakfound to be abundant. Specimens were killed and stored in 95% ethanol, with a change of ethanol after 1–2 months. Full details of locality, date, collector, collection number and coordinates (WGS84 decimal degrees) are provided in Suppl. material 1.
Figure 1.

Map of Southeast Australia showing the distribution of sampling sites with site numbers (see Table 1 and Suppl. material 1 for further details). (light green), (green), s. l./ (yellow), sp. A (red), sp. B (blue).

Map of Southeast Australia showing the distribution of sampling sites with site numbers (see Table 1 and Suppl. material 1 for further details). (light green), (green), s. l./ (yellow), sp. A (red), sp. B (blue).
Table 1.

Site numbers, localities, GenBank accession numbers and repository accession numbers for all specimens analyzed. (See also Fig. 1) NMV; QVMAG; SAM; SMNG; NSW; SA; TAS; VIC. See Suppl. material 1 for further details.

= Museum Victoria, Melbourne, Victoria, Australia

= Queen Victoria Museum and Art Gallery, Launceston, Tasmania, Australia

= South Australian Museum, Adelaide, Australia

= Senckenberg Museum of Natural History Görlitz, Görlitz, Germany

= New South Wales

= South Australia

= Tasmania

= Victoria

SpeciesSite No.LocalityGenBank Acc. No. COIGenBank Acc. No. 16SGenBank Acc. No. 28SVoucher
Outgroup
Somethus scopiferus Jeekel, 2002 SA, Martin Washpool Conservation Park KT948674 KU833272 SMNG VNR016931
Somethus castaneus (Attems, 1944) SA, Adelaide, Upper Sturt KT964477 SAM OM2135
Archicladosoma magnum Jeekel, 1984 VIC, N Rawson KT948681 KU833273 SMNG VNR016994
Ingroup
Pogonosternum adrianae S58 VIC, S Dargo KU745235 KU745194 KU745185 NMV K-12203
Pogonosternum adrianae S59 VIC, W Balook KU745236 KU745195 NMV K-12204
Pogonosternum adrianae S62 VIC, NE Moe KU745237 KU745196 KU745186 NMV K-12207
Pogonosternum coniferum S67 VIC, Langwarrin KU745238 KU745197 NMV K-12212
Pogonosternum coniferum S71 VIC, NE Cape Schanck KU745239 KU745198 NMV K-12213
Pogonosternum laetificum S2 VIC, NE Tyaak KU745240 KU745199 NMV K-12095
Pogonosternum laetificum S5 VIC, SE Glenburn KU745241 KU745200 NMV K-12096
Pogonosternum laetificum S7 VIC, E Toolangi KU745242 KU745201 NMV K-12101
Pogonosternum laetificum S9 VIC, SE Healesville KU745243 KU745202 NMV K-12102
Pogonosternum laetificum S14 VIC, SE Narbethong KU745244 KU745203 KU745187 SMNG VNR016987
Pogonosternum laetificum S15 VIC, E Narbethong KU745245 KU745204 SMNG VNR016988
Pogonosternum laetificum S17 VIC, N Marysville KU745246 KU745205 NMV K-12109
Pogonosternum laetificum S18 VIC, S Eildon KU745247 KU745206 NMV K-12110
Pogonosternum laetificum S19 VIC, W Barjarg KU745248 KU745207 NMV K-12176
Pogonosternum laetificum S88 VIC, Mt Macedon KU745249 KU745208 NMV K-13113
Pogonosternum nigrovirgatum S60 VIC, SE Traralgon South KU745250 KU745209 KU745188 NMV K-12205
Pogonosternum nigrovirgatum S63 VIC, SW Trafalgar KU745251 KU745210 NMV K-12208
Pogonosternum nigrovirgatum S64 VIC, W Nyora KU745252 KU745211 SMNG VNR016989
Pogonosternum nigrovirgatum S65 VIC, SE The Gurdies KT948680 KU745212 KT964478 NMV K-12211
Pogonosternum cf. nigrovirgatumS77 VIC, NW Lorne KU745253 KU745213 SMNG VNR016990
Pogonosternum cf. nigrovirgatumS78 VIC, W Kennett River KU745254 KU745214 NMV K-13114
Pogonosternum cf. nigrovirgatumS81 VIC, N Apollo Bay KU745255 KU745215 KU745189 NMV K-13115
Pogonosternum cf. nigrovirgatumS83 VIC, SW Staughton Vale KU745256 KU745216 SMNG VNR016991
Pogonosternum nigrovirgatum S87 VIC, W Gisborne KU745257 KU745217 NMV K-13116
Pogonosternum cf. nigrovirgatumX2 TAS, S West Montagu KU745258 KU745218 QVMAG:2015:23:1
Pogonosternum sp. AS21 VIC, N Glenrowan KU745259 KU745219 NMV K-12177
Pogonosternum sp. AS22 VIC, NE Thoona I KU745260 KU745220 NMV K-12178
Pogonosternum sp. AS23 VIC, NE Thoona II KU745261 KU745221 NMV K-12179
Pogonosternum sp. AS24 VIC, SE Chiltern KU745262 KU745222 SMNG VNR016992
Pogonosternum sp. AS25 VIC, SSW Chiltern KU745263 KU745223 KU745190 NMV K-12181
Pogonosternum sp. AS31 NSW, E Talbingo I KU745264 KU745224 NMV K-12187
Pogonosternum sp. AS32 NSW, E Talbingo II KU745265 KU745225 NMV K-12188
Pogonosternum sp. AS42 VIC, NNW Bemm River KU745266 KU745226 NMV K-12192
Pogonosternum sp. AS47 VIC, E Orbost KU745267 KU745227 NMV K-12195
Pogonosternum sp. AS49 VIC, Buchan KU745268 KU745228 NMV K-12197
Pogonosternum sp. AS52 VIC, SW Nowa Nowa KU745269 KU745229 NMV K-12199
Pogonosternum sp. AX1 TAS, W Tomahawk KU745270 KU745230 KU745191 SMNG VNR016986
Pogonosternum sp. BS26 NSW, SE Holbrook KU745271 KU745231 NMV K-12182
Pogonosternum sp. BS27 NSW, W Tumbarumba KU745272 KU745232 NMV K-12183
Pogonosternum sp. BS28 NSW, NNE Tumbarumba KU745273 KU745233 KU745192 SMNG VNR016993
Pogonosternum sp. BS29 NSW, SE Batlow KU745274 KU745234 KU745193 NMV K-12185
Site numbers, localities, GenBank accession numbers and repository accession numbers for all specimens analyzed. (See also Fig. 1) NMV; QVMAG; SAM; SMNG; NSW; SA; TAS; VIC. See Suppl. material 1 for further details. = Museum Victoria, Melbourne, Victoria, Australia = Queen Victoria Museum and Art Gallery, Launceston, Tasmania, Australia = South Australian Museum, Adelaide, Australia = Senckenberg Museum of Natural History Görlitz, Görlitz, Germany = New South Wales = South Australia = Tasmania = Victoria

Illustrations

Maps were created with ArcGIS 10. The final phylogenetic trees were edited using Adobe Illustrator CS4.

Molecular analysis

DNA was extracted from 2-4 legs from each of 41 specimens and from the three paradoxosomatid species Jeekel, 1984, Jeekel, 2002 and (Attems, 1944), which were chosen as outgroups (Table 1). Total genomic DNA was extracted using the Qiagen DNAeasy Blood&Tissue kit following the standard protocol except that tissue was incubated for 48h. Glom primer cocktail pairs (Decker 2016, Macek et al. 2014) were used to sequence a 618 bp fragment of the mitochondrial gene. Primer pairs 28S D1a (Fw) and 28S D3b (Rv) (Dell’Ampio et al. 2009) were used to amplify 1225 bp of the D2 fragment and adjacent areas of D1 and D3 on the nuclear 28S ribosomal RNA gene. cytochrome c oxidase subunit I For PCR protocol and all primer sequences (COI, 28S) see Decker (2016). Primer pairs 16Sar (Fw) (5’-CGCCTGTTTAACAAAAACAT-3’) and 16Sbr (Rv) (5’-CCGGTCTGAACTCAGATCACGT-3’) (Simon et al. 1994) were used to sequence a 566 bp fragment of the large-subunit ribosomal RNA (16S) gene. The following thermocycling profile was used to amplify fragments of 16S: pre-denaturation at 94°C for 4 min 30 sec, 35 cycles of 30 sec at 94°C, 30 sec at 49°C and 50 sec at 72°C, and the final extension step for 5 min at 72°C. All PCR mixes had a total volume of 10 µl comprising 1 µl template, 0.2 µM of each primer, 4x0.2 mM dNTPs [Peqlab], 1 x PCR Buffer containing 1.5 mM MgCl2 [Peqlab], and 0.05u Polymerase [Peqlab]. All fragments were sequenced in both directions by the BiK-F Laboratory Centre, Frankfurt, Germany. All obtained sequences were checked via BLAST searches of GenBank; no contamination was discovered. The sequences were aligned by hand in ClustalX ver. 1.83 (Chenna et al. 2003) and uploaded to GenBank (Table 1). Some homologisation problems in the 16S rRNA sequences arose mainly because of the highly variable expansion loops. As a result, selected alignment positions (272-297) were excluded from the 16S rRNA dataset for all further analyses using MEGA6. The final alignments consisted of 618 bp of COI mtDNA, 540 bp of 16S rRNA and 1206 bp of 28S rRNA. The combined datasets after these exclusions consisted of 1158 bp for COI+16S. Individual partial alignments can be obtained from the author upon request. The alignment of the combined dataset can be found in the Suppl. material 2 as a FASTA file. COI and 16S sequences were combined as a single dataset and incongruence assessed between the mtDNA intergenic spacer sequences with the test (Farris et al. 1994) implemented as the partition homogeneity test PageBreakPageBreakPageBreakin PAUP* version 4.0b10 using a full heuristic search, 10 random taxon addition replicates, branch swapping, and with MaxTrees set to 100 (Swofford 2002). The best-fit model of nucleotide substitution for the individual COI and 16S dataset was determined by MrModelTest 2 (Nylander 2004). The best-fit model of nucleotide substitution selected using MrModelTest 2 was the General Time Reversible model with gamma distribution and proportion of invariant sites (Nei and Kumar 2000) for the individual COI and 16S dataset. The trees constructed from individual genes did not show significant conflicts in topology (nodes different among trees with support > 70% in ML) and no significant incongruence among the three genes was revealed by the ILD test (P > 0.83 in all of the pairwise comparisons), so the sequences were concatenated into a dataset containing 1158 characters for phylogenetic analysis. incongruence length difference tree-bisection-reconnection The combined dataset of COI and 16S was analysed under using MEGA6 (Tamura et al. 2011) and using MrBayes version 3.2 (Ronquist et al. 2012). For ML analysis, three independent runs were performed with nodal support estimated from 1000 pseudoreplicates using the best-fit model for the concatenated dataset. For Bayesian analysis, two independent runs were carried out with four differentially heated Metropolis-coupled Monte Carlo Markov chains for 10 000 000 generations started from a random tree and chains were sampled every 100 generations. maximum likelihood Bayesian inference bootstrap Multiple runs of ML and BI converged in trees with the same topology and similar likelihood score so that only the result of the first run is presented. The topology resulting from ML and BI analyses was largely congruent except for the arrangements of several terminal nodes with low support. Thus, results from the ML and BI analyses are shown together based on the ML tree with and of the major lineages shown on the corresponding branches with BP values > 70 (Fig. 2).
Figure 2.

Maximum likelihood tree for the combined mitochondrial COI+16S dataset, 1000 bootstrap replicates, values below 70 not shown. The bootstrap values of ML and posterior probabilities of BI are given above and below the corresponding branches, respectively, for all major clades. Scale bar = substitutions per site. Coloured blocks indicate species groups. Color of branches refers to the major subregions shown in the map, Tasmanian branches thicker. General differences in male gonopod morphology are shown by sketches of the apical region of the right gonopod not drawn to scale. Coloured lines link those analysed specimens that have similar gonopod morphology. Posterior view = post.; lateral view = lat.; anterior view = ant.

bootstrap posterior probabilities Maximum likelihood tree for the combined mitochondrial COI+16S dataset, 1000 bootstrap replicates, values below 70 not shown. The bootstrap values of ML and posterior probabilities of BI are given above and below the corresponding branches, respectively, for all major clades. Scale bar = substitutions per site. Coloured blocks indicate species groups. Color of branches refers to the major subregions shown in the map, Tasmanian branches thicker. General differences in male gonopod morphology are shown by sketches of the apical region of the right gonopod not drawn to scale. Coloured lines link those analysed specimens that have similar gonopod morphology. Posterior view = post.; lateral view = lat.; anterior view = ant. An appropriate DNA substitution model was determined for 28S under the in Modeltest implemented in MEGA 6 (Tamura et al. 2011). The lowest was obtained for 28S rRNA (BIC 3875.11) with the Tamura 3-parameter model (Tamura 1992). Bayesian Information Criterion Bayesian Information Criterion score A phylogenetic hypothesis was inferred for COI+16S and 28S by using the maximum likelihood method conducted in MEGA6 (Tamura et al. 2011). The phylogenetic tree with the highest log likelihood (COI+16S: -7237.4280; 28S: -1831.9238) is shown (Figs 2, 3). Initial trees for the heuristic search were obtained by applying the neighbor-joining method to a matrix of pairwise distances estimated using the approach (Tamura et al. 2004). A discrete Gamma distribution was used to model evolutionary rate differences among sites (five categories (+G, parameter = COI+16S: 0.2338)). The bootstrap consensus tree inferred from 1000 replicates (Felsenstein 1985) is here used as the best estimate of the phylogeny of the analyzed taxa (Figs 2, 3).
Figure 3.

Maximum likelihood tree for the nuclear 28S dataset, 1000 bootstrap replicates, values below 70 not shown.

Maximum Composite Likelihood Maximum likelihood tree for the nuclear 28S dataset, 1000 bootstrap replicates, values below 70 not shown. Mean uncorrected pairwise distances between terminals (transformed into percentages) were determined using MEGA6 (Tamura et al. 2011) and can be found in Suppl. material 3.

Results

Phylogenetic and distance analysis

The monophyly of the genus is strongly supported (ML BP = 97; BI PP = 1.0) in the mitochondrial tree and shows five clades within , resembling five species groups (Fig. 2). One main clade includes three species from the mountainous area east and northeast of Melbourne: the undescribed species sp. B (ML BP = 99; BI PP = 1.0), already mentioned by Car (2010) from New South Wales, (ML BP= 33; BI PP = 1.0) and (ML BP = 68; BI PP = 1.0), both not supported, the latter forming a sister clade (ML BP = 100; BI PP = 1.0) to sp. B. The latter two species show moderately large intraspecific distances ranging from 1.1 to 4.6% ( sp. B) and 0.1 to 3.0% (), while shows high intraspecific distances (0.6–5.5%), even between geographically close (<10 km) populations. sensu lato with a trans-Bass Strait distribution formed a well-supported (ML BP = 89; BI PP = 1.0) sister clade to the new species sp. A (ML BP = 98; BI PP = 1.0) that also has a trans-Bass Strait distribution. sp. A also occurs in New South Wales (Car 2010) and in northeast Tasmania (Mesibov & Churchill 2003). s. l. occurs on mainland Australia (Otway Ranges to eastern Victoria) and in northwest Tasmania. clusters with another form with intermediate gonopods (referred to as in Fig. 2) between sensu stricto and . PageBreakBoth s. l. and sp. A show high intraspecific distances ranging from 1.8 to 6.8% within s. l. and 1.1 to 5.9% within sp. A. Within the s. l. species-group, the greatest genetic distances were observed between populations in the Strzelecki Ranges (S60, S63; ML BP = 100; BI PP = 1.0) and more western populations, with values ranging from 5.0 to 6.8%. Specimens from the Otway Ranges (S77, S78, S81) all formed a well-supported cluster (ML BP = 86; BI PP = 1.0). The Tasmanian specimen (X2) was distinct from both the Strzelecki Ranges (5.4–6.0%) and central and western Victorian specimens (3.7–3.8%). In the case of sp. A the largest distances (4.2–5.8%) were between the Eastern Gippsland populations (S42, S47; ML BP = 100; BI PP = 1.0) and all other specimens. The status of the northeast Tasmanian specimen is not well resolved; it is closest to a population from Kosciuszko National Park (S31, 3.0%), the two forming a poorly supported sister clade with a specimen from Gippsland (S52; ML BP = 55; BI PP = 0.6). All species show considerable intraspecific genetic distances and high phylogeographic structure, especially , and, except in the case of , no haplotypes are shared between different populations. Additional one to three sequenced specimens from eight sampling sites (S14, S15, S22, S58, S59, S78, S83, S87) always showed the same haplotype in (data not published). Interspecific distances within the genus are moderately large, varying from 5.5% ( sp. A– s. l.) to 10.4% ( s. l.–), except to with only 2.9%. Owing to the general lack of variability within the nuclear 28S rRNA dataset, the phylogenetic relationships among species were largely unresolved. Distances for 28S rRNA within are very low, with a maximum of three base pair differences noted for sp. B (Fig. 3). Only the two condensed sister clades of + sp. A and + , as well as sp. B are shown.

Morphology

In a separate paper (Decker, in preparation), the morphology of the species groups is described in detail and new species are described, based on the specimens used here and from ca 130 additional localities. Here I note briefly that several common morphological features were observed in the gonopods of s. l., , and sp. A: some specimens also showed intermediate states of those features (Fig. 2). It was found, however, when additional material was examined from each population that the morphology of each population was locally stable. It was only in rare cases in the Otway Ranges and NW Tasmania populations that two gonopod morphs occurred in one place. Surprisingly, gonopod morphology did not appear to agree well with the phylogenetic tree (Fig. 2). Various gonopod forms were distributed with no apparent phylogeographical correlation. Only the species and sp. B showed stability in both gonopods and some other non-gonopodal characters over their distribution area, even when material from other museum collections was included (Decker, in preparation).

Discussion

Phylogenetic analysis

The mitochondrial tree (Fig. 2) shows five main clades, suggesting five species. clustered within , and its taxonomic status needs re-examination (Decker, in preparation). The 28S tree shows little or only little resolution at the species level (Fig. 3), but was useful in identifying sister clades. This result contrasts with that from a study of the paradoxosomatid genus in South Australia, in which the 28S gene was used successfully for species identification (Decker 2016). Future studies on other Australian will reveal if 28S is useful as a diagnostic nuclear gene at the species level.

Morphological variability

With the exception of and sp. B, species show significant variability in gonopod form, with local morphs occurring throughout each species’ distribution area. Interestingly, is morphologically distinct (in size, spiracles, male tibiotarsal brushes and gonopods, female coxal process) from despite their close genetic distance. Gonopod variability was also documented for some species of in South Australia (Decker 2016) and Humphreys & Shear, 1993 from Western Australia (Humphreys and Shear 1993). Another good example of variability is seen in the trans-Bass Strait (eastern Victoria, NE Tasmania) paradoxosomatid millipede, : while this species shows only slight variability in gonopods there is marked variation in the development of their paranota. Individuals with no paranota are separated from those with keels by a gap between the Kent and Furneaux Groups of islands (Mesibov 2014). This study has shown that in the area of southern and southeast Australia, there are at least two genera, and (Decker 2016), which both show variability in morphology and genetics. Poor sampling and too few specimens could lead to incorrect conclusions and unnecessary multiple species descriptions.

Multiple glacial refugia in southeastern Australia

The results indicate that there is high intraspecific genetic divergence, with high genetic distances and haplotype diversity in the mitochondrial genes between populations of , even those adjacent to each other. The clade, which has been sampled extensively in the Central Highlands, shows particularly high intraspePageBreakcific genetic differences (mean genetic distance of 3.9%), apparently without corresponding geographic patterning, or morphological variation (Decker, in preparation). The phylogenetic patterns with high intraspecific divergence, high genetic distances, and haplotype diversity with unique local haplotypes, resulting in long branches, shown by , indicate multiple Pleistocene refugia according to Byrne (2008). These refugia provided suitably moist habitats in which species could persist during the dry, cold climate cycles of the Pleistocene period in southern Australia, while glaciation was limited to the alpine areas of the Great Dividing Range and Tasmania (Barrows et al. 2002). Moderate to high genetic diversity prior to these cycles can be assumed for poorly dispersing millipedes, through isolation by distance, and it is likely that populations were isolated within refugia, leading to further genetic diversification. In contrast, contractions to one or few major refugia during cold, arid periods would result in a low genetic diversity, few divergent lineages and low haplotype diversity, with few haplotypes in areas of postglacial recolonisation (Byrne 2008). The phylogenetic patterns shown by suggest that in Victoria and New South Wales there were large areas with multiple local refugia during the Pleistocene. No region in the study area on mainland Australia showed results which indicate rapid postglacial resettlement of . Evidence for multiple glacial refugia was also identified in the spirostreptidan millipede Edward & Harvey, 2010 in Western Australia (Nistelberger et al. 2014) and for some species of in South Australia (Decker 2016). Similar phylogeographic patterns seem to occur in other soil invertebrates with limited dispersal capacities in southern Australia, for example flatworms (Sunnucks et al. 2006) and springtails (Garrick et al. 2004). Endo et al. (2014) have suggested, however, that glacial periods have had less of an impact on the distribution and genetic diversity of invertebrate groups (, , , ) in the Australian Alps than they have in alpine systems in the Northern Hemisphere. However, further studies on genetic and morphological variability on a finer geographical scale could lead to a better understanding of the pattern and impact of isolation in multiple glacial refugia during the Pleistocene, also as an evolutionary driving force for morphological variability in some species.

Gippsland phylogeography

There is a notable high genetic distance gap within sensu lato between specimens from the Strzelecki Ranges (S60, S63), West Gippsland, and those sampled in the central and western regions in Victoria, but some specimens of adjacent populations from the latter (S64, S65) were morphologically indistinguishable from PageBreakspecimens from the Strzelecki Ranges. A similar genetic gap was observed in sp. A for the populations in Eastern Gippsland east of Orbost (S42, S47) and all other populations. These two cases indicate that these areas may have been isolated for long periods from neighboring regions, possibly before the Pleistocene, perhaps during a marine incursion in the Gippsland Basin and other parts of southeast Australia close to the Miocene–Pliocene boundary (Dickinson et al. 2002).

Trans-Bass Strait distribution

The genus shows a trans-Bass Strait distribution and most likely originated in mainland southeast Australia, since the highest species diversity is found on the mainland and the two Tasmanian branches occupy only very subordinate positions on the tree (Fig. 2). Tasmanian populations of this genus are restricted to the northeast and northwest corners of the Tasmanian mainland and neighboring islands, and presumably dispersed from Victoria when it was largely connected with Tasmania during the Pleistocene (Lambeck and Chappell 2001). Mitochondrial data suggest that the sequenced population of s. l. in northwest Tasmania was most likely derived from one in central Victoria or the Otway Ranges. While the results for sp. A from northeast Tasmania do not show a close relationship to coastal Victorian populations, analysis of 16S (data not included here) including sequences from two other localities in the western part of East Gippsland showed the Tasmanian specimen clustering with the latter. This indicates that the settlement of Tasmania by this species started in the Gippsland region. A remarkably similar distribution to that of sp. A across Bass Strait is also known for the paradoxosomatid millipedes and (Mesibov 2014). Further studies using more sampling localities in Tasmania and its islands could indicate points of origin in Victoria and the timing of millipede settlement of Tasmania.
  13 in total

1.  Multiple sequence alignment with the Clustal series of programs.

Authors:  Ramu Chenna; Hideaki Sugawara; Tadashi Koike; Rodrigo Lopez; Toby J Gibson; Desmond G Higgins; Julie D Thompson
Journal:  Nucleic Acids Res       Date:  2003-07-01       Impact factor: 16.971

2.  Phylogeography recapitulates topography: very fine-scale local endemism of a saproxylic 'giant' springtail at Tallaganda in the Great Dividing Range of south-east Australia.

Authors:  R C Garrick; C J Sands; D M Rowell; N N Tait; P Greenslade; P Sunnucks
Journal:  Mol Ecol       Date:  2004-11       Impact factor: 6.185

3.  Estimation of the number of nucleotide substitutions when there are strong transition-transversion and G+C-content biases.

Authors:  K Tamura
Journal:  Mol Biol Evol       Date:  1992-07       Impact factor: 16.240

4.  Sea level change through the last glacial cycle.

Authors:  K Lambeck; J Chappell
Journal:  Science       Date:  2001-04-27       Impact factor: 47.728

5.  MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Authors:  Koichiro Tamura; Daniel Peterson; Nicholas Peterson; Glen Stecher; Masatoshi Nei; Sudhir Kumar
Journal:  Mol Biol Evol       Date:  2011-05-04       Impact factor: 16.240

6.  A tale of two flatties: different responses of two terrestrial flatworms to past environmental climatic fluctuations at Tallaganda in montane southeastern Australia.

Authors:  Paul Sunnucks; Mark J Blacket; Jody M Taylor; Chester J Sands; Sherryn A Ciavaglia; Ryan C Garrick; Noel N Tait; David M Rowell; Alexandra Pavlova
Journal:  Mol Ecol       Date:  2006-12       Impact factor: 6.185

7.  Evidence for stabilizing selection and slow divergent evolution of male genitalia in a millipede (Antichiropus variabilis).

Authors:  Janine M Wojcieszek; Leigh W Simmons
Journal:  Evolution       Date:  2011-12-06       Impact factor: 3.694

8.  Evolution underground: a molecular phylogenetic investigation of Australian burrowing freshwater crayfish (Decapoda: Parastacidae) with particular focus on Engaeus Erichson.

Authors:  Mark B Schultz; Sarah A Smith; Pierre Horwitz; Alastair M M Richardson; Keith A Crandall; Christopher M Austin
Journal:  Mol Phylogenet Evol       Date:  2008-12-11       Impact factor: 4.286

9.  Phylogeographic divergence in the widespread delicate skink (Lampropholis delicata) corresponds to dry habitat barriers in eastern Australia.

Authors:  David G Chapple; Conrad J Hoskin; Stephanie N J Chapple; Michael B Thompson
Journal:  BMC Evol Biol       Date:  2011-07-04       Impact factor: 3.260

10.  MrBayes 3.2: efficient Bayesian phylogenetic inference and model choice across a large model space.

Authors:  Fredrik Ronquist; Maxim Teslenko; Paul van der Mark; Daniel L Ayres; Aaron Darling; Sebastian Höhna; Bret Larget; Liang Liu; Marc A Suchard; John P Huelsenbeck
Journal:  Syst Biol       Date:  2012-02-22       Impact factor: 15.683

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