Literature DB >> 27107642

Structure of the ArsI C-As Lyase: Insights into the Mechanism of Degradation of Organoarsenical Herbicides and Growth Promoters.

Venkadesh Sarkarai Nadar1, Masafumi Yoshinaga2, Shashank S Pawitwar3, Palani Kandavelu4, Banumathi Sankaran5, Barry P Rosen6.   

Abstract

Arsenic is a ubiquitous and carcinogenic environmental element that enters the biosphere primarily from geochemical sources, but also through anthropogenic activities. Microorganisms play an important role in the arsenic biogeochemical cycle by biotransformation of inorganic arsenic into organic arsenicals and vice versa. ArsI is a microbial non-heme, ferrous-dependent dioxygenase that transforms toxic methylarsenite [MAs(III)] to less toxic and carcinogenic inorganic arsenite [As(III)] by C-As bond cleavage. An ArsI ortholog, TcArsI, from the thermophilic bacterium Thermomonospora curvata was expressed, purified, and crystallized. The structure was solved in both the apo form and with Ni(II), Co(II), or Fe(III). The MAs(III) binding site is a vicinal cysteine pair in a flexible loop. A structure with the loop occupied with β-mercaptoethanol mimics binding of MAs(III). The structure of a mutant protein (Y100H/V102F) was solved in two different crystal forms with two other orientations of the flexible loop. These results suggest that a loop-gating mechanism controls the catalytic reaction. In the ligand-free open state, the loop is exposed to solvent, where it can bind MAs(III). The loop moves toward the active site, where it forms a closed state that orients the C-As bond for dioxygen addition and cleavage. Elucidation of the enzymatic mechanism of this unprecedented C-As lyase reaction will enhance our understanding of recycling of environmental organoarsenicals.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  C–As lyase; MSMA; organoarsenical growth promoters; organoarsenical herbicides; roxarsone

Mesh:

Substances:

Year:  2016        PMID: 27107642      PMCID: PMC4989922          DOI: 10.1016/j.jmb.2016.04.022

Source DB:  PubMed          Journal:  J Mol Biol        ISSN: 0022-2836            Impact factor:   5.469


  30 in total

1.  Demethylation of methylarsonic acid by a microbial community.

Authors:  Masafumi Yoshinaga; Yong Cai; Barry P Rosen
Journal:  Environ Microbiol       Date:  2011-01-27       Impact factor: 5.491

2.  Substructure solution with SHELXD.

Authors:  Thomas R Schneider; George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2002-09-28

Review 3.  Non-heme iron-dependent dioxygenases: unravelling catalytic mechanisms for complex enzymatic oxidations.

Authors:  Timothy D H Bugg; S Ramaswamy
Journal:  Curr Opin Chem Biol       Date:  2008-02-20       Impact factor: 8.822

4.  Solvent content of protein crystals.

Authors:  B W Matthews
Journal:  J Mol Biol       Date:  1968-04-28       Impact factor: 5.469

5.  Molecular insight into bacterial cleavage of oceanic dimethylsulfoniopropionate into dimethyl sulfide.

Authors:  Chun-Yang Li; Tian-Di Wei; Sheng-Hui Zhang; Xiu-Lan Chen; Xiang Gao; Peng Wang; Bin-Bin Xie; Hai-Nan Su; Qi-Long Qin; Xi-Ying Zhang; Juan Yu; Hong-Hai Zhang; Bai-Cheng Zhou; Gui-Peng Yang; Yu-Zhong Zhang
Journal:  Proc Natl Acad Sci U S A       Date:  2014-01-06       Impact factor: 11.205

6.  Metalloregulatory properties of the ArsD repressor.

Authors:  Y Chen; B P Rosen
Journal:  J Biol Chem       Date:  1997-05-30       Impact factor: 5.157

7.  A novel biosensor selective for organoarsenicals.

Authors:  Jian Chen; Yong-Guan Zhu; Barry P Rosen
Journal:  Appl Environ Microbiol       Date:  2012-07-27       Impact factor: 4.792

8.  Identification of a putative metal binding site in a new family of metalloregulatory proteins.

Authors:  W Shi; J Wu; B P Rosen
Journal:  J Biol Chem       Date:  1994-08-05       Impact factor: 5.157

9.  A C⋅As lyase for degradation of environmental organoarsenical herbicides and animal husbandry growth promoters.

Authors:  Masafumi Yoshinaga; Barry P Rosen
Journal:  Proc Natl Acad Sci U S A       Date:  2014-05-12       Impact factor: 11.205

10.  Searching protein structure databases with DaliLite v.3.

Authors:  L Holm; S Kääriäinen; P Rosenström; A Schenkel
Journal:  Bioinformatics       Date:  2008-09-25       Impact factor: 6.937

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  2 in total

Review 1.  The organoarsenical biocycle and the primordial antibiotic methylarsenite.

Authors:  Jiaojiao Li; Shashank S Pawitwar; Barry P Rosen
Journal:  Metallomics       Date:  2016-10-01       Impact factor: 4.526

2.  Biochemical Characterization of ArsI: A Novel C-As Lyase for Degradation of Environmental Organoarsenicals.

Authors:  Shashank S Pawitwar; Venkadesh S Nadar; Ashoka Kandegedara; Timothy L Stemmler; Barry P Rosen; Masafumi Yoshinaga
Journal:  Environ Sci Technol       Date:  2017-09-22       Impact factor: 9.028

  2 in total

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