Literature DB >> 27107375

Details Matter: Designing Skin Microbiome Studies.

Heidi H Kong1.   

Abstract

The use of genomic sequencing to investigate microbes has expanded, yet it has also raised questions regarding optimal approaches to studying the skin microbiome. Meisel et al. show that while whole genome shotgun metagenomic sequences were most similar to expected microbial profiles, sequencing of the hypervariable regions V1-V3 of the 16S ribosomal RNA gene had greater accuracy than sequencing of the hypervariable region V4 in determining genus and species level classifications of prominent skin bacteria.
Copyright © 2016 The Author. Published by Elsevier Inc. All rights reserved.

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Year:  2016        PMID: 27107375      PMCID: PMC5482528          DOI: 10.1016/j.jid.2016.03.004

Source DB:  PubMed          Journal:  J Invest Dermatol        ISSN: 0022-202X            Impact factor:   8.551


  20 in total

1.  A detailed analysis of 16S ribosomal RNA gene segments for the diagnosis of pathogenic bacteria.

Authors:  Soumitesh Chakravorty; Danica Helb; Michele Burday; Nancy Connell; David Alland
Journal:  J Microbiol Methods       Date:  2007-02-22       Impact factor: 2.363

2.  Extensive strain-level copy-number variation across human gut microbiome species.

Authors:  Sharon Greenblum; Rogan Carr; Elhanan Borenstein
Journal:  Cell       Date:  2015-01-29       Impact factor: 41.582

3.  Bacterial community variation in human body habitats across space and time.

Authors:  Elizabeth K Costello; Christian L Lauber; Micah Hamady; Noah Fierer; Jeffrey I Gordon; Rob Knight
Journal:  Science       Date:  2009-11-05       Impact factor: 47.728

4.  Topographical and temporal diversity of the human skin microbiome.

Authors:  Elizabeth A Grice; Heidi H Kong; Sean Conlan; Clayton B Deming; Joie Davis; Alice C Young; Gerard G Bouffard; Robert W Blakesley; Patrick R Murray; Eric D Green; Maria L Turner; Julia A Segre
Journal:  Science       Date:  2009-05-29       Impact factor: 47.728

5.  Skin Microbiome Surveys Are Strongly Influenced by Experimental Design.

Authors:  Jacquelyn S Meisel; Geoffrey D Hannigan; Amanda S Tyldsley; Adam J SanMiguel; Brendan P Hodkinson; Qi Zheng; Elizabeth A Grice
Journal:  J Invest Dermatol       Date:  2016-01-29       Impact factor: 8.551

6.  Structure, function and diversity of the healthy human microbiome.

Authors: 
Journal:  Nature       Date:  2012-06-13       Impact factor: 49.962

7.  Temporal shifts in the skin microbiome associated with disease flares and treatment in children with atopic dermatitis.

Authors:  Heidi H Kong; Julia Oh; Clay Deming; Sean Conlan; Elizabeth A Grice; Melony A Beatson; Effie Nomicos; Eric C Polley; Hirsh D Komarow; Patrick R Murray; Maria L Turner; Julia A Segre
Journal:  Genome Res       Date:  2012-02-06       Impact factor: 9.043

8.  Evaluation of 16S rDNA-based community profiling for human microbiome research.

Authors: 
Journal:  PLoS One       Date:  2012-06-13       Impact factor: 3.240

9.  Biogeography and individuality shape function in the human skin metagenome.

Authors:  Julia Oh; Allyson L Byrd; Clay Deming; Sean Conlan; Heidi H Kong; Julia A Segre
Journal:  Nature       Date:  2014-10-02       Impact factor: 49.962

10.  Propionibacterium acnes strain populations in the human skin microbiome associated with acne.

Authors:  Sorel Fitz-Gibbon; Shuta Tomida; Bor-Han Chiu; Lin Nguyen; Christine Du; Minghsun Liu; David Elashoff; Marie C Erfe; Anya Loncaric; Jenny Kim; Robert L Modlin; Jeff F Miller; Erica Sodergren; Noah Craft; George M Weinstock; Huiying Li
Journal:  J Invest Dermatol       Date:  2013-01-21       Impact factor: 8.551

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  15 in total

1.  Letter to the Editor regarding Qui et al: "Cutibacterium acnes and the shoulder microbiome".

Authors:  Dustin R Long; Jason E Hsu; Stephen J Salipante; Roger E Bumgarner
Journal:  J Shoulder Elbow Surg       Date:  2019-08       Impact factor: 3.019

2.  Longitudinal Changes in Skin Microbiome Associated with Change in Skin Status in Patients with Psoriasis.

Authors:  Hailun Wang; Mandy W M Chan; Henry H Chan; Herbert Pang
Journal:  Acta Derm Venereol       Date:  2020-11-24       Impact factor: 3.875

3.  Oropharyngeal and Sputum Microbiomes Are Similar Following Exacerbation of Chronic Obstructive Pulmonary Disease.

Authors:  Hai-Yue Liu; Shi-Yu Zhang; Wan-Ying Yang; Xiao-Fang Su; Yan He; Hong-Wei Zhou; Jin Su
Journal:  Front Microbiol       Date:  2017-06-22       Impact factor: 5.640

4.  Comprehensive skin microbiome analysis reveals the uniqueness of human skin and evidence for phylosymbiosis within the class Mammalia.

Authors:  Ashley A Ross; Kirsten M Müller; J Scott Weese; Josh D Neufeld
Journal:  Proc Natl Acad Sci U S A       Date:  2018-06-05       Impact factor: 11.205

5.  New Insights into the Intrinsic and Extrinsic Factors That Shape the Human Skin Microbiome.

Authors:  Pedro A Dimitriu; Brandon Iker; Kausar Malik; Hilary Leung; W W Mohn; Greg G Hillebrand
Journal:  mBio       Date:  2019-07-02       Impact factor: 7.867

6.  Improved single-swab sample preparation for recovering bacterial and phage DNA from human skin and wound microbiomes.

Authors:  Samuel Verbanic; Colin Y Kim; John M Deacon; Irene A Chen
Journal:  BMC Microbiol       Date:  2019-09-05       Impact factor: 3.605

7.  16S rDNA based skin microbiome data of healthy individuals and leprosy patients from India.

Authors:  Nitin Bayal; Sunil Nagpal; Mohammed Monzoorul Haque; Milind S Patole; Vijayalakshmi Valluri; Rohini Suryavanshi; Sharmila S Mande; Shekhar C Mande
Journal:  Sci Data       Date:  2019-10-22       Impact factor: 6.444

8.  The Skin Microbiome of Cohabiting Couples.

Authors:  Ashley A Ross; Andrew C Doxey; Josh D Neufeld
Journal:  mSystems       Date:  2017-07-20       Impact factor: 6.496

9.  Effects of cosmetics on the skin microbiome of facial cheeks with different hydration levels.

Authors:  Hyo Jung Lee; Sang Eun Jeong; Soyoun Lee; Sungwoo Kim; Hyuntak Han; Che Ok Jeon
Journal:  Microbiologyopen       Date:  2017-11-29       Impact factor: 3.139

10.  Alteration of the cutaneous microbiome in psoriasis and potential role in Th17 polarization.

Authors:  Hsin-Wen Chang; Di Yan; Rasnik Singh; Jared Liu; Xueyan Lu; Derya Ucmak; Kristina Lee; Ladan Afifi; Douglas Fadrosh; John Leech; Kimberly S Vasquez; Margaret M Lowe; Michael D Rosenblum; Tiffany C Scharschmidt; Susan V Lynch; Wilson Liao
Journal:  Microbiome       Date:  2018-09-05       Impact factor: 14.650

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