Literature DB >> 27100835

Pseudo progression identification of glioblastoma with dictionary learning.

Jian Zhang1, Hengyong Yu2, Xiaohua Qian1, Keqin Liu1, Hua Tan1, Tielin Yang3, Maode Wang4, King Chuen Li1, Michael D Chan5, Waldemar Debinski5, Anna Paulsson5, Ge Wang6, Xiaobo Zhou7.   

Abstract

OBJECTIVE: Although the use of temozolomide in chemoradiotherapy is effective, the challenging clinical problem of pseudo progression has been raised in brain tumor treatment. This study aims to distinguish pseudo progression from true progression.
MATERIALS AND METHODS: Between 2000 and 2012, a total of 161 patients with glioblastoma multiforme (GBM) were treated with chemoradiotherapy at our hospital. Among the patients, 79 had their diffusion tensor imaging (DTI) data acquired at the earliest diagnosed date of pseudo progression or true progression, and 23 had both DTI data and genomic data. Clinical records of all patients were kept in good condition. Volumetric fractional anisotropy (FA) images obtained from the DTI data were decomposed into a sequence of sparse representations. Then, a feature selection algorithm was applied to extract the critical features from the feature matrix to reduce the size of the feature matrix and to improve the classification accuracy.
RESULTS: The proposed approach was validated using the 79 samples with clinical DTI data. Satisfactory results were obtained under different experimental conditions. The area under the receiver operating characteristic (ROC) curve (AUC) was 0.87 for a given dictionary with 1024 atoms. For the subgroup of 23 samples, genomics data analysis was also performed. Results implied further perspective on pseudo progression classification.
CONCLUSIONS: The proposed method can determine pseudo progression and true progression with improved accuracy. Laboring segmentation is no longer necessary because this skillfully designed method is not sensitive to tumor location.
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Dictionary learning; Diffusion tensor imaging (DTI); Fractional anisotropy (FA); Genomics analysis; Glioblastoma multiforme; Pseudo progression

Mesh:

Substances:

Year:  2016        PMID: 27100835      PMCID: PMC5094462          DOI: 10.1016/j.compbiomed.2016.03.027

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  26 in total

1.  Support vector machine multiparametric MRI identification of pseudoprogression from tumor recurrence in patients with resected glioblastoma.

Authors:  Xintao Hu; Kelvin K Wong; Geoffrey S Young; Lei Guo; Stephen T Wong
Journal:  J Magn Reson Imaging       Date:  2011-02       Impact factor: 4.813

2.  Image denoising via sparse and redundant representations over learned dictionaries.

Authors:  Michael Elad; Michal Aharon
Journal:  IEEE Trans Image Process       Date:  2006-12       Impact factor: 10.856

3.  Bayesian analysis of neuroimaging data in FSL.

Authors:  Mark W Woolrich; Saad Jbabdi; Brian Patenaude; Michael Chappell; Salima Makni; Timothy Behrens; Christian Beckmann; Mark Jenkinson; Stephen M Smith
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Review 4.  Pseudoprogression and pseudoresponse: imaging challenges in the assessment of posttreatment glioma.

Authors:  L C Hygino da Cruz; I Rodriguez; R C Domingues; E L Gasparetto; A G Sorensen
Journal:  AJNR Am J Neuroradiol       Date:  2011-03-10       Impact factor: 3.825

5.  Morphologic MRI features, diffusion tensor imaging and radiation dosimetric analysis to differentiate pseudo-progression from early tumor progression.

Authors:  Ajay Agarwal; Sanath Kumar; Jayant Narang; Lonni Schultz; Tom Mikkelsen; Sumei Wang; Sarmad Siddiqui; Harish Poptani; Rajan Jain
Journal:  J Neurooncol       Date:  2013-02-18       Impact factor: 4.130

Review 6.  Radiation oncology in brain tumors: current approaches and clinical trials in progress.

Authors:  Michael D Chan; Stephen B Tatter; Glenn Lesser; Edward G Shaw
Journal:  Neuroimaging Clin N Am       Date:  2010-06-18       Impact factor: 2.264

Review 7.  Pseudoprogression: relevance with respect to treatment of high-grade gliomas.

Authors:  James Fink; Donald Born; Marc C Chamberlain
Journal:  Curr Treat Options Oncol       Date:  2011-09

8.  Response classification based on a minimal model of glioblastoma growth is prognostic for clinical outcomes and distinguishes progression from pseudoprogression.

Authors:  Maxwell Lewis Neal; Andrew D Trister; Sunyoung Ahn; Anne Baldock; Carly A Bridge; Laura Guyman; Jordan Lange; Rita Sodt; Tyler Cloke; Albert Lai; Timothy F Cloughesy; Maciej M Mrugala; Jason K Rockhill; Russell C Rockne; Kristin R Swanson
Journal:  Cancer Res       Date:  2013-02-11       Impact factor: 12.701

Review 9.  FSL.

Authors:  Mark Jenkinson; Christian F Beckmann; Timothy E J Behrens; Mark W Woolrich; Stephen M Smith
Journal:  Neuroimage       Date:  2011-09-16       Impact factor: 6.556

Review 10.  Monitoring radiographic brain tumor progression.

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Journal:  Toxins (Basel)       Date:  2011-03-15       Impact factor: 4.546

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  7 in total

Review 1.  Machine learning studies on major brain diseases: 5-year trends of 2014-2018.

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2.  Glioblastoma radiomics: can genomic and molecular characteristics correlate with imaging response patterns?

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Journal:  Neuroradiology       Date:  2018-08-10       Impact factor: 2.804

Review 3.  Precision Digital Oncology: Emerging Role of Radiomics-based Biomarkers and Artificial Intelligence for Advanced Imaging and Characterization of Brain Tumors.

Authors:  Reza Forghani
Journal:  Radiol Imaging Cancer       Date:  2020-07-31

4.  Comparative evaluation of intracranial oligodendroglioma and astrocytoma of similar grades using conventional and T1-weighted DCE-MRI.

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Journal:  Neuroradiology       Date:  2021-01-19       Impact factor: 2.804

Review 5.  High-Grade Glioma Treatment Response Monitoring Biomarkers: A Position Statement on the Evidence Supporting the Use of Advanced MRI Techniques in the Clinic, and the Latest Bench-to-Bedside Developments. Part 1: Perfusion and Diffusion Techniques.

Authors:  Otto M Henriksen; María Del Mar Álvarez-Torres; Patricia Figueiredo; Gilbert Hangel; Vera C Keil; Ruben E Nechifor; Frank Riemer; Kathleen M Schmainda; Esther A H Warnert; Evita C Wiegers; Thomas C Booth
Journal:  Front Oncol       Date:  2022-03-03       Impact factor: 5.738

6.  Classifying Glioblastoma Multiforme Follow-Up Progressive vs. Responsive Forms Using Multi-Parametric MRI Features.

Authors:  Adrian Ion-Mărgineanu; Sofie Van Cauter; Diana M Sima; Frederik Maes; Stefan Sunaert; Uwe Himmelreich; Sabine Van Huffel
Journal:  Front Neurosci       Date:  2017-01-11       Impact factor: 4.677

Review 7.  Machine learning imaging applications in the differentiation of true tumour progression from treatment-related effects in brain tumours: A systematic review and meta-analysis.

Authors:  Abhishta Bhandari; Ravi Marwah; Justin Smith; Duy Nguyen; Asim Bhatti; Chee Peng Lim; Arian Lasocki
Journal:  J Med Imaging Radiat Oncol       Date:  2022-05-22       Impact factor: 1.667

  7 in total

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