| Literature DB >> 27099781 |
D N Shcherbinin1, S V Alekseeva1, M M Shmarov1, Yu A Smirnov1, B S Naroditskiy1, A L Gintsburg1.
Abstract
Vaccination has been successfully used to prevent influenza for a long time. Influenza virus hemagglutinin (HA), which induces a humoral immune response in humans and protection against the flu, is the main antigenic component of modern influenza vaccines. However, new seasonal and pandemic influenza virus variants with altered structures of HA occasionally occur. This allows the pathogen to avoid neutralization with antibodies produced in response to previous vaccination. Development of a vaccine with the new variants of HA acting as antigens takes a long time. Therefore, during an epidemic, it is important to have passive immunization agents to prevent and treat influenza, which can be monoclonal or single-domain antibodies with universal specificity (broad-spectrum agents). We considered antibodies to conserved epitopes of influenza virus antigens as universal ones. In this paper, we tried to characterize the main B-cell epitopes of hemagglutinin and analyze our own and literature data on broadly neutralizing antibodies. We conducted a computer analysis of the best known conformational epitopes of influenza virus HAs using materials of different databases. The analysis showed that the core of the HA molecule, whose antibodies demonstrate pronounced heterosubtypic activity, can be used as a target for the search for and development of broad-spectrum antibodies to the influenza virus.Entities:
Keywords: Influenza virus; broad-spectrum monoclonal antibodies; broad-spectrum single-domain antibodies; conformational epitopes; hemagglutinin
Year: 2016 PMID: 27099781 PMCID: PMC4837568
Source DB: PubMed Journal: Acta Naturae ISSN: 2075-8251 Impact factor: 1.845
Known antibodies to B-cell epitopes of influenza A and B virus HAs
|
Antigenic | Antibody | PDB ID |
Source of |
Antibody | Source of antigen | Reference |
|---|---|---|---|---|---|---|
| R.b.p. | CH65, CH67 | 3SM5 | H. s. | IgG1 | A/Solomon Islands/3/2006(H1N1) | [ |
| R.b.p. | CH65 | 3SM5 | H. s. | IgG1 | A/Solomon Islands/3/2006(H1N1) | [ |
| R.b.p. | CH67 | 4HKX | H. s. | IgG1 | A/Solomon Islands/3/2006(H1N1) | [ |
| Sasite | 2D1 | 3LZF | H. s. | ? | A/South Carolina/1/1918(H1N1) | [ |
| R.b.p. | 1F1 | 4GXU | H. s. | ? | A/South Carolina/1/1918(H1N1) | [ |
| GC0757 | 4F15 | M. m. | ? | A/California/04/2009(H1N1) | [ | |
| GC0587 | 4LVH | M. m. | ? | A/California/04/2009(H1N1) | [ | |
| R.b.p. | 5J8 | 4M5Z | H. s. | ? | A/California/07/2009(H1N1) | [ |
| R.e.s. | H5M9 | 4MHH | M. m. | IgG1 | A/Viet Nam/1203/2004 (H5N1) | [ |
| H5M9 | 4MHJ | A/goose/Guangdong/1/1996(H5N1) | [ | |||
| R.b.p. | 8F8 | 4HF5 | H. s. | ? | A/Japan/305+/1957(H2N2) | [ |
| R.b.p. | 8M2 | 4HFU | H. s. | ? | A/Japan/305+/1957(H2N2) | [ |
| R.b.p. | 2G1 | 4HG4 | H. s. | ? | A/Japan/305+/1957(H2N2) | [ |
| R.e.s. | BH151 | 1EO8 | M. m. | IgG1 | A/X-31(H3N2) | [ |
| R.e.s. | HC45 | 1QFU | M. m. | IgG1 | A/X-31(H3N2) | [ |
| R.b.p. | C05 | 4FP8 | H. s. | ? | A/Hong Kong/1/1968(H3N2) | [ |
| R.b.p. | S139/1 | 4GMS | M. m. | IgG2a | A/Victoria/3/1975(H3N2) | [ |
| R.b.p. | F045-092 | 4O58 | H. s. | ? | A/Victoria/3/1975(H3N2) | [ |
| R.b.p. | F045-092 | 4O5I | H. s. | ? | A/Singapore/H2011.447/2011(H3N2) | [ |
| R.b.p. | HC63 | 1KEN | M. m. | ? | A/X-31(H3N2) | [ |
| R.b.p. | HC19 | 2VIR | M. m. | IgG1 | A/X-31(H3N2) | [ |
| IIB4 | M. m. | ? | A/Philippines/2/1982(H3N2) | [ | ||
| Fab 26/9 | 1FRG | M. m. | IgG2a | A/Victoria/3/1975(H3N2) | [ | |
| CR8071 | 4FQJ | H. s. | IgG1 | B/Florida/4/2006 | [ | |
| CR8059 | 4FQK | H. s. | IgG1 | B/Brisbane/60/2008 | [ | |
| S.p. | FI6v3 | 3ZTJ | H. s. | ? | A/Aichi/2/1968(H3N2) | [ |
| FI6v3 | 3ZTN | H. s. | ? | A/California/04/2009(H1N1) | [ | |
| MAb 3.1 | 4PY8 | H. s. | IgG1 | A/South Carolina/1/1918(H1N1) | [ | |
| CR6261 | 3GBN | M. m. | IgG1 | A/Brevig Mission/1/1918(H1N1) | [ | |
| CR6261 | 3GBM | M. m. | IgG1 | A/Viet Nam/1203/2004(H5N1) | [ | |
| CR8020 | 3SDY | H. s. | ? | A/Hong Kong/1/1968(H3N2) | [ | |
| F10 | 3FKU | H. s. | IgG1 | A/Viet Nam/1203/2004(H5N1) | [ | |
| C179 | 4HLZ | M. m. | IgG2a | A/Japan/305/1957(H2N2) | [ | |
| CR8043 | 4NM8 | H. s. | IgG1 | A/Hong Kong/1/1968(H3N2) | [ | |
| CR9114 | 4FQI | H. s. | IgG1 | A/Viet Nam/1203/2004(H5N1) | [ | |
| CR9114 | 4FQV | -//-//- | -//-//- | A/Netherlands/219/2003(H7N7) | [ | |
| CR9114 | 4FQY | -//-//- | -//-//- | A/Hong Kong/1/1968(H3N2) | [ | |
| Fab 39.29 | 4KVN | H. s. | ? | A/Perth/16/2009(H3N2) | [ |
Information on the best known conformational B-cell epitopes of influenza virus HAs was obtained from the database of immunological epitopes (IEDB – Immune Epitope Database and analysis resource www.iedb.org) and the protein database (PDB – Protein Data Bank; www.rcsb.org). The H1 subgroup of influenza viruses (H1, H5, and H2) is colored in blue, the H3 subgroup is colored in green; and antibodies to the stem portion of HAs of different influenza viruses are colored in red. S.p. – stem portion. R.b.p. – receptor binding pocket, R.e.s. – the site localized in a rudimentary esterase subdomain, H. s. – Homo sapiens, M. m. – Mus musculus.
Interaction between monoclonal antibodies specific to the stem portion of HA and different subtypes of influenza A viruses.
|
Group classification of | Monoclonal antibody | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| C179 | F10 | CR6261 | MAb 3.1 | CR8020 | CR8043 | Fab 39.29 | FI6v3* | CR9114** | ||
|
| H9 | n.t. | + | + | - | - | - | n.t. | n.t. | + |
| H8 | n.t. | + | + | - | - | - | n.t. | n.t. | + | |
| H12 | - | n.t. | - | - | - | - | n.t. | n.t. | + | |
| H6 | + | + | + | + | - | - | n.t. | n.t. | + | |
| H1 | + | + | + | + | - | - | + | + | + | |
| H2 | + | + | + | + | - | - | + | n.t. | + | |
| H5 | + | + | + | + | - | - | + | + | + | |
| H11 | n.t. | + | - | - | - | - | n.t. | n.t. | n.t. | |
| H13 | - | - | - | - | - | - | n.t. | n.t. | n.t. | |
| H16 | - | - | - | - | - | - | n.t. | n.t. | n.t. | |
| H3 | - | - | - | - | + | n.t. | + | + | + | |
| H4 | - | - | - | - | + | n.t. | n.t. | n.t. | + | |
| H14 | - | - | - | - | n.t. | + | n.t. | n.t. | n.t. | |
| H10 | - | - | - | - | + | n.t. | n.t. | n.t. | + | |
| H7 | - | - | - | - | + | + | + | + | + | |
| H15 | - | - | - | - | n.t. | + | n.t. | n.t. | n.t. | |
Note. “+”- Neutralization of influenza virus, “-” interaction with HA was not detected, “n.t.”– not tested. Group H1 influenza viruses are shown in red, group H3 antibodies are shown in green.
* FI6v3 antibodies interact with other subtypes of HA, but neutralization of the virus has not been investigated.
** CR9114 interacts with the influenza B virus, but it does not neutralize it.