| Literature DB >> 27096156 |
Nils Pilotte1,2, Weam I Zaky1, Brian P Abrams3, Dave D Chadee4, Steven A Williams1,2.
Abstract
BACKGROUND: Given the continued successes of the world's lymphatic filariasis (LF) elimination programs and the growing successes of many malaria elimination efforts, the necessity of low cost tools and methodologies applicable to long-term disease surveillance is greater than ever before. As many countries reach the end of their LF mass drug administration programs and a growing number of countries realize unprecedented successes in their malaria intervention efforts, the need for practical molecular xenomonitoring (MX), capable of providing surveillance for disease recrudescence in settings of decreased parasite prevalence is increasingly clear. Current protocols, however, require testing of mosquitoes in pools of 25 or fewer, making high-throughput examination a challenge. The new method we present here screens the excreta/feces from hundreds of mosquitoes per pool and provides proof-of-concept for a practical alternative to traditional methodologies resulting in significant cost and labor savings. METHODOLOGY/PRINCIPALEntities:
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Year: 2016 PMID: 27096156 PMCID: PMC4838226 DOI: 10.1371/journal.pntd.0004641
Source DB: PubMed Journal: PLoS Negl Trop Dis ISSN: 1935-2727
Evaluation of extraction methods for the isolation of DNA from mosquito excreta/feces.
| DNA Extraction Method | Quantity of Excreta/Feces (Mosquito Excreta/Feces/Days) | # of Samples (# of Positives) |
|---|---|---|
| Qiagen DNeasy Blood and Tissue (Qiagen, Valencia, CA) | 62.5 | 2 (0) |
| Overnight Soak in 1 x PBS | 62.5 | 8 (0) |
| Overnight Soak in 1 x TE | 62.5 | 8 (0) |
| Phire Plant Direct PCR Kit (Thermo Fisher Scientific, Vantaa, Finland) | 62.5 | 8 (0) |
| Published Insect Feces Extraction[ | 1–2 | 5 (0) |
| Published Insect Feces Extraction[ | 1–2 | 5 (0) |
| QIAamp DNA Micro Kit Extraction (Qiagen, Valencia, CA) | 1–2 | 5 (5) |
| Nucleospin Blood DNA Kit (Macherey-Nagel, Bethlehem, PA) | 1–2 | 5 (0) |
| Nucleospin Blood DNA Kit (Macherey-Nagel, Bethlehem, PA) | 1–2 | 5 (0) |
* Mosquito Excreta/Feces/Days are defined as the estimated quantity of excreta/feces produced by a single mosquito over a 24 hour period.
PCR positivity of excreta/feces from mosquitoes potentially infected with B. malayi.
| Sample # | Ct Value (Std. Dev.) | Sample # | Ct Value (Std. Dev.) |
|---|---|---|---|
| 1 | Negative | 32 | Negative |
| 2 | 27.75 (+/- 0.15) | 33 | Negative |
| 3 | 28.67 (+/- 0.17) | 34 | Negative |
| 4 | Negative | 35 | Negative |
| 5 | 38.25 (+/- 2.79) | 36 | Negative |
| 6 | Negative | 37 | Negative |
| 7 | Negative | 38 | Negative |
| 8 | 36.53 (+/- 2.33) | 39 | 39.07 (+/- 1.07) |
| 9 | 40.49 (+/- 0.12) | 40 | Negative |
| 10 | Negative | 41 | Negative |
| 11 | 34.80 (+/- 0.70) | 42 | Negative |
| 12 | 37.55 (+/- 0.91) | 43 | Negative |
| 13 | 41.96 (+/- 2.67) | 44 | 40.74 (+/- 2.17) |
| 14 | 40.54 (+/- 1.26) | 45 | Negative |
| 15 | Negative | 46 | 31.69 (+/- 0.50) |
| 16 | Negative | 47 | Negative |
| 17 | Negative | 48 | 38.88 (+/- 0.49) |
| 18 | Negative | 49 | 37.69 (+/- 0.69) |
| 19 | Negative | 50 | Negative |
| 20 | Negative | 51 | 40.32 (+/- 0.43) |
| 21 | Negative | 52 | Negative |
| 22 | Negative | 53 | 37.49 (+/- 1.53) |
| 23 | Negative | 54 | Negative |
| 24 | Negative | 55 | 39.48 (+/- 2.37) |
| 25 | 41.44 (+/- 0.95) | 56 | 26.62 (+/- 0.24) |
| 26 | 27.91 (+/- 0.54) | 57 | Negative |
| 27 | Negative | 58 | Negative |
| 28 | 41.98 (+/- 0.03) | 59 | Negative |
| 29 | Negative | Negative Extract #1 | Negative |
| 30 | Negative | Negative Extract #2 | Negative |
| 31 | Negative |
Limits for the detection of B. malayi DNA in mosquito excreta/feces samples.
| Sample ID | Quantity of Potentially Positive Excreta/Feces (Mosquito Excreta/Feces/Days) | Quantity of Negative Excreta/Feces (Mosquito Excreta/Feces/Days) | Ct Value (Std. Dev.) |
|---|---|---|---|
| A | 1–2 | 62.5 | Negative |
| B | 1–2 | 62.5 | Negative |
| C | 1–2 | 62.5 | Negative |
| D | 1–2 | 62.5 | 37.89 (+/- 2.31) |
| E | 1–2 | 62.5 | 38.77 (+/- 0.20) |
| F | 1–2 | 125 | 30.98 (+/- 0.20) |
| G | 1–2 | 125 | Negative |
| H | 1–2 | 125 | Negative |
| I | 1–2 | 125 | Negative |
| J | 1–2 | 125 | Negative |
| K | 1–2 | 125 | Negative |
| L | 1–2 | 250 | 29.56 (+/- 0.01) |
| M | 1–2 | 250 | 35.88 (+/- 0.04) |
| N | 1–2 | 250 | Negative |
| O | 1–2 | 250 | 38.73 (+/- 0.91) |
| P | 1–2 | 250 | Negative |
| Q | 1–2 | 250 | Negative |
| R | 1–2 | 500 | Negative |
| S | 1–2 | 500 | 38.40 (+/- 1.03) |
| Negative #1 | N/A | 62.5 | Negative |
| Negative #2 | N/A | 62.5 | Negative |
| Negative #3 | N/A | 62.5 | Negative |
* Mosquito Excreta/Feces/Days are defined as the estimated quantity of excreta/feces produced by a single mosquito over a 24 hour period.
PCR positivity of excreta/feces from mosquitoes infected with P. vivax.
| Sample # | Ct Value (std. dev.) | Sample # | Ct Value (std. dev.) |
|---|---|---|---|
| 1 | 28.23 (+/- 0.58) | 12 | 28.77 (+/- 0.09) |
| 2 | 27.84 (+/- 0.05) | 13 | 28.83 (+/- 0.49) |
| 3 | 27.85 (+/- 0.15) | 14 | 27.88 (+/- 0.19) |
| 4 | 27.85 (+/- 0.29) | 15 | 27.36 (+/- 0.14) |
| 5 | 26.82 (+/- 0.26) | 16 | 26.82 (+/- 0.10) |
| 6 | 27.98 (+/- 0.28) | 17 | 28.00 (+/- 0.27) |
| 7 | 26.94 (+/- 0.20) | 18 | 28.48 (+/- 0.29) |
| 8 | 27.26 (+/- 0.32) | 19 | 28.40 (+/- 0.26) |
| 9 | 27.19 (+/- 0.32) | 20 | 28.07 (+/- 0.12) |
| 10 | 28.37 (+/- 0.49) | Negative Extract #1 | Negative |
| 11 | 29.21 (+/- 0.80) | Negative Extract #2 | Negative |