Literature DB >> 27090628

Grasping the nature of the cell interior: from Physiological Chemistry to Chemical Biology.

Ciara Kyne1, Peter B Crowley1.   

Abstract

Current models of the cell interior emphasise its crowded, chemically complex and dynamically organised structure. Although the chemical composition of cells is known, the cooperative intermolecular interactions that govern cell ultrastructure are poorly understood. A major goal of biochemistry is to capture these myriad interactions in vivo. We consider the landmark discoveries that have shaped this objective, starting from the vitalist framework established by early natural philosophers. Through this historical revisionism, we extract important lessons for the bioinspired chemists of today. Scientific specialisation tends to insulate seminal ideas and hamper the unification of paradigms across biology. Therefore, we call for interdisciplinary collaboration in grappling with the complex cell interior. Recent successes in integrative structural biology and chemical biology demonstrate the power of hybrid approaches. The future roles of the (bio)chemist and model systems are also discussed as starting points for in vivo explorations.
© 2016 Federation of European Biochemical Societies.

Keywords:  cytoplasmic structure; emergent physicochemical properties; hybrid methods; in vivo studies; macromolecular machines

Mesh:

Substances:

Year:  2016        PMID: 27090628     DOI: 10.1111/febs.13744

Source DB:  PubMed          Journal:  FEBS J        ISSN: 1742-464X            Impact factor:   5.542


  7 in total

Review 1.  A cell is more than the sum of its (dilute) parts: A brief history of quinary structure.

Authors:  Rachel D Cohen; Gary J Pielak
Journal:  Protein Sci       Date:  2017-02-13       Impact factor: 6.725

Review 2.  Emergence of Life on Earth: A Physicochemical Jigsaw Puzzle.

Authors:  Jan Spitzer
Journal:  J Mol Evol       Date:  2016-12-19       Impact factor: 2.395

Review 3.  Interaction proteomics by using in-cell NMR spectroscopy.

Authors:  Leonard Breindel; David S Burz; Alexander Shekhtman
Journal:  J Proteomics       Date:  2018-02-08       Impact factor: 4.044

4.  Total Cellular RNA Modulates Protein Activity.

Authors:  Subhabrata Majumder; Christopher M DeMott; Sergey Reverdatto; David S Burz; Alexander Shekhtman
Journal:  Biochemistry       Date:  2016-08-03       Impact factor: 3.162

5.  Ordering Protein Contact Matrices.

Authors:  Chuan Xu; Guillaume Bouvier; Benjamin Bardiaux; Michael Nilges; Thérèse Malliavin; Abdel Lisser
Journal:  Comput Struct Biotechnol J       Date:  2018-03-16       Impact factor: 7.271

6.  Crowding in Cellular Environments at an Atomistic Level from Computer Simulations.

Authors:  Michael Feig; Isseki Yu; Po-Hung Wang; Grzegorz Nawrocki; Yuji Sugita
Journal:  J Phys Chem B       Date:  2017-07-12       Impact factor: 2.991

7.  Intact ribosomes drive the formation of protein quinary structure.

Authors:  Leonard Breindel; Jianchao Yu; David S Burz; Alexander Shekhtman
Journal:  PLoS One       Date:  2020-04-24       Impact factor: 3.240

  7 in total

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