Literature DB >> 27087127

Development of Potent and Selective Inhibitors for Group VIA Calcium-Independent Phospholipase A2 Guided by Molecular Dynamics and Structure-Activity Relationships.

Varnavas D Mouchlis1, Dimitris Limnios2, Maroula G Kokotou2, Efrosini Barbayianni2, George Kokotos2, J Andrew McCammon1, Edward A Dennis1.   

Abstract

The development of inhibitors for phospholipase A2 (PLA2) is important in elucidating the enzymes implication in various biological pathways. PLA2 enzymes are an important pharmacological target implicated in various inflammatory diseases. Computational chemistry, organic synthesis, and in vitro assays were employed to develop potent and selective inhibitors for group VIA calcium-independent PLA2. A set of fluoroketone inhibitors was studied for their binding mode with two human cytosolic PLA2 enzymes: group IVA cPLA2 and group VIA iPLA2. New compounds were synthesized and assayed toward three major PLA2s. This study led to the development of four potent and selective thioether fluoroketone inhibitors as well as a thioether keto-1,2,4-oxadiazole inhibitor for GVIA iPLA2, which will serve as lead compounds for future development and studies. The keto-1,2,4-oxadiazole functionality with a thioether is a novel structure, and it will be used as a lead to develop inhibitors with higher potency and selectivity toward GVIA iPLA2.

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Year:  2016        PMID: 27087127      PMCID: PMC4946799          DOI: 10.1021/acs.jmedchem.6b00377

Source DB:  PubMed          Journal:  J Med Chem        ISSN: 0022-2623            Impact factor:   7.446


  44 in total

1.  Structure-activity relationship of 2-oxoamide inhibition of group IVA cytosolic phospholipase A2 and group V secreted phospholipase A2.

Authors:  David A Six; Efrosini Barbayianni; Vassilios Loukas; Violetta Constantinou-Kokotou; Dimitra Hadjipavlou-Litina; Daren Stephens; Alan C Wong; Victoria Magrioti; Panagiota Moutevelis-Minakakis; Sharon F Baker; Edward A Dennis; George Kokotos
Journal:  J Med Chem       Date:  2007-08-02       Impact factor: 7.446

2.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

Review 3.  Synthetic and natural inhibitors of phospholipases A2: their importance for understanding and treatment of neurological disorders.

Authors:  Wei-Yi Ong; Tahira Farooqui; George Kokotos; Akhlaq A Farooqui
Journal:  ACS Chem Neurosci       Date:  2015-05-01       Impact factor: 4.418

Review 4.  Phospholipase A2 inhibitors for the treatment of inflammatory diseases: a patent review (2010--present).

Authors:  Victoria Magrioti; George Kokotos
Journal:  Expert Opin Ther Pat       Date:  2013-01-08       Impact factor: 6.674

5.  Update of the CHARMM all-atom additive force field for lipids: validation on six lipid types.

Authors:  Jeffery B Klauda; Richard M Venable; J Alfredo Freites; Joseph W O'Connor; Douglas J Tobias; Carlos Mondragon-Ramirez; Igor Vorobyov; Alexander D MacKerell; Richard W Pastor
Journal:  J Phys Chem B       Date:  2010-06-17       Impact factor: 2.991

6.  CHARMM general force field: A force field for drug-like molecules compatible with the CHARMM all-atom additive biological force fields.

Authors:  K Vanommeslaeghe; E Hatcher; C Acharya; S Kundu; S Zhong; J Shim; E Darian; O Guvench; P Lopes; I Vorobyov; A D Mackerell
Journal:  J Comput Chem       Date:  2010-03       Impact factor: 3.376

7.  Crystal structure of human cytosolic phospholipase A2 reveals a novel topology and catalytic mechanism.

Authors:  A Dessen; J Tang; H Schmidt; M Stahl; J D Clark; J Seehra; W S Somers
Journal:  Cell       Date:  1999-04-30       Impact factor: 41.582

8.  Molecular cloning and expression of human Ca(2+)-sensitive cytosolic phospholipase A2.

Authors:  J D Sharp; D L White; X G Chiou; T Goodson; G C Gamboa; D McClure; S Burgett; J Hoskins; P L Skatrud; J R Sportsman
Journal:  J Biol Chem       Date:  1991-08-15       Impact factor: 5.157

9.  Role of calcium-independent phospholipase A2 in the pathogenesis of Barth syndrome.

Authors:  Ashim Malhotra; Irit Edelman-Novemsky; Yang Xu; Heide Plesken; Jinping Ma; Michael Schlame; Mindong Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2009-01-21       Impact factor: 11.205

Review 10.  Inhibitors of proteases and amide hydrolases that employ an alpha-ketoheterocycle as a key enabling functionality.

Authors:  Bruce E Maryanoff; Michael J Costanzo
Journal:  Bioorg Med Chem       Date:  2007-11-06       Impact factor: 3.641

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  16 in total

Review 1.  Phospholipase A2 catalysis and lipid mediator lipidomics.

Authors:  Varnavas D Mouchlis; Edward A Dennis
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-08-23       Impact factor: 4.698

2.  Analyses of Calcium-Independent Phospholipase A2beta (iPLA2β) in Biological Systems.

Authors:  S E Barbour; S Ramanadham
Journal:  Methods Enzymol       Date:  2016-10-18       Impact factor: 1.600

Review 3.  Liberating Chiral Lipid Mediators, Inflammatory Enzymes, and LIPID MAPS from Biological Grease.

Authors:  Edward A Dennis
Journal:  J Biol Chem       Date:  2016-08-23       Impact factor: 5.157

4.  β-Lactones: A Novel Class of Ca2+-Independent Phospholipase A2 (Group VIA iPLA2) Inhibitors with the Ability To Inhibit β-Cell Apoptosis.

Authors:  Christina Dedaki; Maroula G Kokotou; Varnavas D Mouchlis; Dimitris Limnios; Xiaoyong Lei; Carol T Mu; Sasanka Ramanadham; Victoria Magrioti; Edward A Dennis; George Kokotos
Journal:  J Med Chem       Date:  2019-03-12       Impact factor: 7.446

5.  Each phospholipase A2 type exhibits distinct selectivity toward sn-1 ester, alkyl ether, and vinyl ether phospholipids.

Authors:  Daiki Hayashi; Varnavas D Mouchlis; Edward A Dennis
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2021-10-09       Impact factor: 5.228

6.  Lipidomics-based assays coupled with computational approaches can identify novel phospholipase A2 inhibitors.

Authors:  Varnavas D Mouchlis; Carol Mu; Renee Hammons; Edward A Dennis
Journal:  Adv Biol Regul       Date:  2020-03-10

Review 7.  Review of four major distinct types of human phospholipase A2.

Authors:  Alexis M Vasquez; Varnavas D Mouchlis; Edward A Dennis
Journal:  Adv Biol Regul       Date:  2017-10-23

Review 8.  iPLA2β and its role in male fertility, neurological disorders, metabolic disorders, and inflammation.

Authors:  John Turk; Tayleur D White; Alexander J Nelson; Xiaoyong Lei; Sasanka Ramanadham
Journal:  Biochim Biophys Acta Mol Cell Biol Lipids       Date:  2018-11-05       Impact factor: 4.698

9.  2-Oxoesters: A Novel Class of Potent and Selective Inhibitors of Cytosolic Group IVA Phospholipase A2.

Authors:  Maroula G Kokotou; Gerasimia Galiatsatou; Victoria Magrioti; Giorgos Koutoulogenis; Efrosini Barbayianni; Dimitris Limnios; Varnavas D Mouchlis; Banita Satpathy; Aaron Navratil; Edward A Dennis; George Kokotos
Journal:  Sci Rep       Date:  2017-08-01       Impact factor: 4.379

10.  Membrane Allostery and Unique Hydrophobic Sites Promote Enzyme Substrate Specificity.

Authors:  Varnavas D Mouchlis; Yuan Chen; J Andrew McCammon; Edward A Dennis
Journal:  J Am Chem Soc       Date:  2018-02-26       Impact factor: 15.419

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