| Literature DB >> 27081564 |
Xinlun Tian1, Yaping Liu2, Jun Yang2, Han Wang2, Tao Liu1, Wenbing Xu1, Xue Li1, Yuanjue Zhu1, Kai-Feng Xu1, Xue Zhang2.
Abstract
Cystic fibrosis (CF), the most common life-threatening autosomal recessive disorder in Caucasians, is caused by mutations in CF transmembrane conductance regulator gene (CFTR). We and others previously identified CFTR mutations in 20 Chinese patients with CF. In this study, eight Chinese patients with a clinical diagnosis of suspected CF were newly collected and screened for CFTR mutations using a combination of conventional Sanger sequencing and multiplex ligation-dependent probe amplification (MLPA) analysis. The CFTR mutations observed in Chinese CF patients, both reported previously and identified in the present study, were also summarized. In the newly collected patients, we identified 10 different CFTR mutations, including p.F508del, the most common CF-causing mutation in Caucasians, and three novel mutations (p.V1212Afs*15; p.L666* and p.A969A). Most notably, the previously reported p.G970D mutation was found in six patients, making it the most frequent CFTR mutation identified in Chinese CF patients thus far. In conclusion, we detected p.F508del for the first time, identified additional novel CFTR mutations and recorded the most frequent CF-causing mutation in Chinese CF patients.Entities:
Year: 2016 PMID: 27081564 PMCID: PMC4785583 DOI: 10.1038/hgv.2015.63
Source DB: PubMed Journal: Hum Genome Var ISSN: 2054-345X
Figure 2Impact of the c.2907A>C mutation on the CFTR splicing pattern. (a) The wild-type and the mutant exonic sequences of exon 17 of CFTR were PCRamplified from patient genomic DNA, together with ~260 bp of their 5′ and 3′ intronic flanking sequences, using specific primers carrying 5’ tails with BglII and MluI restriction sites. The amplicons are cloned into the pCAS2 reporter vector, which is based on the pcDNA3.1 plasmid and contains a minigene composed of exon A and exon B. (b) A 2% agarose gel showing the different fragments of cDNA obtained using specific primers with total cDNA for each plasmid construct. Lanes 2, 3 and 4 represent three independent transfections of the empty, mutant (c.2907 C) and wild-type (c.2907A) constructs. Lane 1 contains the DL 2000 DNA marker (M). Two fragments are visible: the wild-type fragment, showing normal splicing with exon 17 (717 bp); and the mutant fragment, in which exon 17 is skipped (466 bp). (c) Sequencing traces of the 717 bp fragment (wild-type), with normal splicing, and the 466 bp fragment (mutant), in which exon 17 is skipped.
Clinical data and characteristics of CFTR gene mutations in eight Chinese CF patients examined in the current study
| Age at diagnosis | 20 | 15 | 1 | 13 | 15 | 22 | 4 | 13 |
| Gender | M | F | F | M | M | F | F | F |
| Age at onset of symptom | Several months | 12 Years | 4 Months | 1 Year | 14 Years | 12 Years | 3 Months | 12 Years |
| Wt/Ht(kg/m) | 52/1.74 | 42/1.65 | 8/NA | 48/1.6 | 55/1.78 | 45/1.67 | 11/0.93 | 32/1.49 |
| Family history | None | None | Yes | None | Yes | Yes | None | None |
| Sweat test [Cl−] (mmol/l) | 137 | 140 | 108.4 | 95.2 | 106.5 | 101.9 | 122.1 | 62 |
| Gastrointestinal symptoms | Recurrent diarrhea, marasmus | Marasmus | Recurrent diarrhea; Meconium ileus suspected | None | None | Marasmus | Malnutrition | Malnutrition |
| Comorbidity | None | None | None | ABPA | None | ABPA | None | ABPA |
| Pulmonary function test | FEV1 43.6% PRED FEV1/FVC 56.96% | Not available | Not available | FEV1 61.4% PRED FEV1/FVC 74.5% | FEV1 81.7% PRED FEV1/FVC 77.01% | FEV1 30.2% PRED FEV1/FVC 47.98% | Not available | FEV1 72.9% PRED FEV1/FVC 69.48% |
| Diagnosis before CF confirmation | Bronchiectasis | Bronchiectasis | Bartter Syndrome | Bartter Syndrome and bronchiectasis | Bronchiectasis | Bronchiectasis | Bronchiectasis | ABPA |
| PS/PI | PI suspected | PI | PI suspected | PS | PS | PS | PS | PS |
| Sudan III Staining | Negative | Positive | Negative | Negative | Negative | Negative | Negative | Negative |
| Sputum culture | Pseudomonas Aeruginosa | Pseudomonas Aeruginosa | Pseudomonas Aeruginosa and Methicillin Resistant Staphylococus Epidermidis | Pseudomonas Aeruginosa | Pseudomonas Aeruginosa | Escherichia coli (extended-spectrum beta-lactamase+) and Pseudomonas Aeruginosa | Pseudomonas Aeruginosa | Negative |
| Nucleotide change | c.2909G>A | c.2909G>A | c.2909G>A | c.3700A>G |
| c.2909G>A | c.2909G>A | c.2909G>A |
| Amino acid change | p.G970D | p.G970D | p.G970D | p.I1234V |
| p.G970D | p.G970D | p.G970D |
| Nucleotide change | c.1521_1523delCTT | c.2374C>T | c.2125C>T | c.959–960insA | not detected |
| c.263T>G |
|
| Amino acid change | p.F508del | p.R792* | p.R709* | p.S321Ifs*42 | NA |
| p.L88* |
|
Abbreviations: ABPA, allergic bronchopulmonary aspergillosis; CF, cystic fibrosis; CFTR RefSeq, NM_000492.3; F, female; FEV1, forced expiratory volume in 1s; FVC, forced vital capacity; M, male; NA, not applicable; PI, pancreatic insufficiency; pred, predicted; PS, pancreatic sufficiency;
Novel mutation (shown in bold) identified in the present study.
Performed MLPA.
Figure 1CFTR mutation spectrum in Chinese patients with CF. Upper panel: CFTR mutations identified in our current (eight CFs) and previous (seven CFs) (#14–20, as in Table 2) samples of Chinese CF patients collected at PUMCH. The three novel mutations identified in the current study are highlighted in green; the most common mutation found in Chinese CF patients thus far is highlighted in blue; the most common mutation found in Caucasian CF patients is highlighted in purple. Lower panel: CFTR mutations identified in previous studies (#1–13 as in Table 2) in Chinese patients with CF. The CFTR gene is shown with rescaled exons and minimized introns, and is not drawn to scale. CF, cystic fibrosis; PUMCH, Peking Union Medical College Hospital.
Characteristics of CFTR gene mutations in Chinese CF patients in the available published literature
| 1 (ref. | E2 del about 30 bp | NA | NA | NA |
| 2 (ref. | c.1766+5G>T | NA | NA | NA |
| 3 (ref. | c.1766+5G>T | NA | c.1766+5G>T | NA |
| 4 (ref. | c.1766+1G>T | NA | NA | NA |
| 5 (ref. | c.319–326delGCTTCCTA | p.A107X | c. 2909G>A | p.G970D |
| 6 (ref. | c.1766+5G>T | NA | c.2083dupG | p.E695GfsX35 |
| c.2684G>A | p.S895N | |||
| 7 (ref. | c.1766+5G>T | NA | c.2083dupG | p.E695GfsX35 |
| c.2684G>A | p.S895N | |||
| 8 (ref. | c.19G>T | p.E7X | c. 860dupA | p.N287KfsX21 |
| 9 (ref. | c.1766+5G>T | NA | c.2083dupG | p.E695GfsX35 |
| c.2684G>A | p.S895N | |||
| 10 (ref. | c.1657C>T | p.R553X | c.1657C>T | p.R553X |
| 11 (ref. | c.567C>A | p.N189K | c.3691delT | p.S1231PfsX4 |
| 12 (ref. | c.263T>G | p.L88X | c.2909G>A | p.G970D |
| 13 (ref. | c.3196C>T | p.R1066C | c.3196C>T | p.R1066C |
| 14 (ref. | c.293A>G | p.Q98R | c.293A>G | p.Q98R |
| 15 (ref. | c.95T>C | p.L32P | c.1657C>T | p.R553X |
| 16 (ref. | c.293A>G | p.Q98R | c.558C>G | p.N186K |
| 17 (ref. | c.2052 dupA | p. Q686TfsX3 | ΔE18-E20 (c.2909−?_3367+?del) | p.G980_T1112 delinsG |
| 18 (ref. | c.2909G>A | p.G970D | ΔE7-E11 (c.744−?_1584+?del) | p.R248_E528 delinsRfsX11 |
| 19 (ref. | c.1666A>G | p.I556V | Not detected | NA |
| 20 (ref. | c.1679+2T>C | NA | c.2658-1G>C | NA |
Abbreviations: CF, cystic fibrosis; NA, not applicable.