Literature DB >> 27079684

Genome-wide association studies and epigenome-wide association studies go together in cancer control.

Mukesh Verma1.   

Abstract

Completion of the human genome a decade ago laid the foundation for: using genetic information in assessing risk to identify individuals and populations that are likely to develop cancer, and designing treatments based on a person's genetic profiling (precision medicine). Genome-wide association studies (GWAS) completed during the past few years have identified risk-associated single nucleotide polymorphisms that can be used as screening tools in epidemiologic studies of a variety of tumor types. This led to the conduct of epigenome-wide association studies (EWAS). This article discusses the current status, challenges and research opportunities in GWAS and EWAS. Information gained from GWAS and EWAS has potential applications in cancer control and treatment.

Entities:  

Keywords:  biomarkers; cancer; epidemiology; epigenetics; genomics; omics technologies; outcome; personalized medicine; pharmacogenomics

Mesh:

Year:  2016        PMID: 27079684      PMCID: PMC5551540          DOI: 10.2217/fon-2015-0035

Source DB:  PubMed          Journal:  Future Oncol        ISSN: 1479-6694            Impact factor:   3.404


  148 in total

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Authors:  Laura Fachal; Alison M Dunning
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2.  Association of PSCA rs2294008 gene variants with poor prognosis and increased susceptibility to gastric cancer and decreased risk of duodenal ulcer disease.

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Journal:  Int J Cancer       Date:  2015-03-19       Impact factor: 7.396

3.  The somatic genomic landscape of chromophobe renal cell carcinoma.

Authors:  Caleb F Davis; Christopher J Ricketts; Min Wang; Lixing Yang; Andrew D Cherniack; Hui Shen; Christian Buhay; Hyojin Kang; Sang Cheol Kim; Catherine C Fahey; Kathryn E Hacker; Gyan Bhanot; Dmitry A Gordenin; Andy Chu; Preethi H Gunaratne; Michael Biehl; Sahil Seth; Benny A Kaipparettu; Christopher A Bristow; Lawrence A Donehower; Eric M Wallen; Angela B Smith; Satish K Tickoo; Pheroze Tamboli; Victor Reuter; Laura S Schmidt; James J Hsieh; Toni K Choueiri; A Ari Hakimi; Lynda Chin; Matthew Meyerson; Raju Kucherlapati; Woong-Yang Park; A Gordon Robertson; Peter W Laird; Elizabeth P Henske; David J Kwiatkowski; Peter J Park; Margaret Morgan; Brian Shuch; Donna Muzny; David A Wheeler; W Marston Linehan; Richard A Gibbs; W Kimryn Rathmell; Chad J Creighton
Journal:  Cancer Cell       Date:  2014-08-21       Impact factor: 31.743

4.  Acetylation of intragenic histones on HPV16 correlates with enhanced HPV16 gene expression.

Authors:  Cecilia Johansson; Tavan Jamal Fattah; Haoran Yu; Jakob Nygren; Ann-Kristin Mossberg; Stefan Schwartz
Journal:  Virology       Date:  2015-04-17       Impact factor: 3.616

5.  Genome-wide association study of gastric adenocarcinoma in Asia: a comparison of associations between cardia and non-cardia tumours.

Authors:  Nan Hu; Zhaoming Wang; Xin Song; Lixuan Wei; Byung Sik Kim; Neal D Freedman; Jiwon Baek; Laurie Burdette; Jiang Chang; Charles Chung; Sanford M Dawsey; Ti Ding; Yu-Tang Gao; Carol Giffen; Yaling Han; Myunghee Hong; Jia Huang; Hee Sung Kim; Woon-Puay Koh; Linda M Liao; Yi Min Mao; You-Lin Qiao; Xiao-Ou Shu; Wen Tan; Chaoyu Wang; Chen Wu; Min-Jie Wu; Yong-Bing Xiang; Meredith Yeager; Jeong Hwan Yook; Jian-Min Yuan; Peng Zhang; Xue-Ke Zhao; Wei Zheng; Kyuyoung Song; Li-Dong Wang; Dongxin Lin; Stephen J Chanock; Alisa M Goldstein; Philip R Taylor; Christian C Abnet
Journal:  Gut       Date:  2015-06-30       Impact factor: 23.059

6.  Intraindividual variation and short-term temporal trend in DNA methylation of human blood.

Authors:  Yurii B Shvetsov; Min-Ae Song; Qiuyin Cai; Maarit Tiirikainen; Yong-Bing Xiang; Xiao-Ou Shu; Herbert Yu
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2014-12-23       Impact factor: 4.254

Review 7.  P53 tumor suppression network in cancer epigenetics.

Authors:  Alok Mishra; Daniel J Brat; Mukesh Verma
Journal:  Methods Mol Biol       Date:  2015

8.  The 19q12 bladder cancer GWAS signal: association with cyclin E function and aggressive disease.

Authors:  Yi-Ping Fu; Indu Kohaar; Lee E Moore; Petra Lenz; Jonine D Figueroa; Wei Tang; Patricia Porter-Gill; Nilanjan Chatterjee; Alexandra Scott-Johnson; Montserrat Garcia-Closas; Brian Muchmore; Dalsu Baris; Ashley Paquin; Kris Ylaya; Molly Schwenn; Andrea B Apolo; Margaret R Karagas; McAnthony Tarway; Alison Johnson; Adam Mumy; Alan Schned; Liliana Guedez; Michael A Jones; Masatoshi Kida; G M Monawar Hosain; Nuria Malats; Manolis Kogevinas; Adonina Tardon; Consol Serra; Alfredo Carrato; Reina Garcia-Closas; Josep Lloreta; Xifeng Wu; Mark Purdue; Gerald L Andriole; Robert L Grubb; Amanda Black; Maria T Landi; Neil E Caporaso; Paolo Vineis; Afshan Siddiq; H Bas Bueno-de-Mesquita; Dimitrios Trichopoulos; Börje Ljungberg; Gianluca Severi; Elisabete Weiderpass; Vittorio Krogh; Miren Dorronsoro; Ruth C Travis; Anne Tjønneland; Paul Brennan; Jenny Chang-Claude; Elio Riboli; Jennifer Prescott; Constance Chen; Immaculata De Vivo; Edward Govannucci; David Hunter; Peter Kraft; Sara Lindstrom; Susan M Gapstur; Eric J Jacobs; W Ryan Diver; Demetrius Albanes; Stephanie J Weinstein; Jarmo Virtamo; Charles Kooperberg; Chancellor Hohensee; Rebecca J Rodabough; Victoria K Cortessis; David V Conti; Manuela Gago-Dominguez; Mariana C Stern; Malcolm C Pike; David Van Den Berg; Jian-Min Yuan; Christopher A Haiman; Olivier Cussenot; Geraldine Cancel-Tassin; Morgan Roupret; Eva Comperat; Stefano Porru; Angela Carta; Sofia Pavanello; Cecilia Arici; Giuseppe Mastrangelo; H Barton Grossman; Zhaoming Wang; Xiang Deng; Charles C Chung; Amy Hutchinson; Laurie Burdette; William Wheeler; Joseph Fraumeni; Stephen J Chanock; Stephen M Hewitt; Debra T Silverman; Nathaniel Rothman; Ludmila Prokunina-Olsson
Journal:  Cancer Res       Date:  2014-10-15       Impact factor: 12.701

9.  Epigenome-Wide Association Studies (EWAS) in Cancer.

Authors:  Mukesh Verma
Journal:  Curr Genomics       Date:  2012-06       Impact factor: 2.236

10.  A Genome Wide Study of Copy Number Variation Associated with Nasopharyngeal Carcinoma in Malaysian Chinese Identifies CNVs at 11q14.3 and 6p21.3 as Candidate Loci.

Authors:  Joyce Siew Yong Low; Yoon Ming Chin; Taisei Mushiroda; Michiaki Kubo; Gopala Krishnan Govindasamy; Kin Choo Pua; Yoke Yeow Yap; Lee Fah Yap; Selva Kumar Subramaniam; Cheng Ai Ong; Tee Yong Tan; Alan Soo Beng Khoo; Ching Ching Ng
Journal:  PLoS One       Date:  2016-01-05       Impact factor: 3.240

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  10 in total

Review 1.  Epigenetic Biomarkers in Colorectal Cancer.

Authors:  Mukesh Verma; Vineet Kumar
Journal:  Mol Diagn Ther       Date:  2017-04       Impact factor: 4.074

Review 2.  Genetic and Epigenetic Regulation of Brain Organoids.

Authors:  You-Wei Wang; Nan Hu; Xiao-Hong Li
Journal:  Front Cell Dev Biol       Date:  2022-07-01

Review 3.  Sex-Dependent Effects of Developmental Lead Exposure on the Brain.

Authors:  Garima Singh; Vikrant Singh; Marissa Sobolewski; Deborah A Cory-Slechta; Jay S Schneider
Journal:  Front Genet       Date:  2018-03-16       Impact factor: 4.599

4.  Ewastools: Infinium Human Methylation BeadChip pipeline for population epigenetics integrated into Galaxy.

Authors:  Katarzyna Murat; Björn Grüning; Paulina Wiktoria Poterlowicz; Gillian Westgate; Desmond J Tobin; Krzysztof Poterlowicz
Journal:  Gigascience       Date:  2020-05-01       Impact factor: 6.524

5.  Identifying Transcriptomic Signatures and Rules for SARS-CoV-2 Infection.

Authors:  Yu-Hang Zhang; Hao Li; Tao Zeng; Lei Chen; Zhandong Li; Tao Huang; Yu-Dong Cai
Journal:  Front Cell Dev Biol       Date:  2021-01-11

6.  Revisiting the metallothionein genes polymorphisms and the risk of oral squamous cell carcinoma in a Brazilian population.

Authors:  R-R Rosa; M-A Garcia; P-T Alves; E-M Sousa; L-S Pimentel; L-D Barbosa; A-M Loyola; L-R Goulart; P-C Faria; S-V Cardoso
Journal:  Med Oral Patol Oral Cir Bucal       Date:  2021-05-01

7.  The EpiDiverse Plant Epigenome-Wide Association Studies (EWAS) Pipeline.

Authors:  Sultan Nilay Can; Adam Nunn; Dario Galanti; David Langenberger; Claude Becker; Katharina Volmer; Katrin Heer; Lars Opgenoorth; Noe Fernandez-Pozo; Stefan A Rensing
Journal:  Epigenomes       Date:  2021-05-04

Review 8.  Researches of Epigenetic Epidemiology for Infections and Radiation as Carcinogen.

Authors:  Jong-Myon Bae
Journal:  J Prev Med Public Health       Date:  2018-07-02

9.  Prognostic value of epigenomic profiling in lung cancer.

Authors:  Alok Mishra; Mukesh Verma
Journal:  Transl Cancer Res       Date:  2019-04       Impact factor: 1.241

10.  Cancer Biology, Epidemiology, and Treatment in the 21st Century: Current Status and Future Challenges From a Biomedical Perspective.

Authors:  Patricia Piña-Sánchez; Antonieta Chávez-González; Martha Ruiz-Tachiquín; Eduardo Vadillo; Alberto Monroy-García; Juan José Montesinos; Rocío Grajales; Marcos Gutiérrez de la Barrera; Hector Mayani
Journal:  Cancer Control       Date:  2021 Jan-Dec       Impact factor: 3.302

  10 in total

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