Literature DB >> 27076654

Quantitative Assessment of Commutability for Clinical Viral Load Testing Using a Digital PCR-Based Reference Standard.

L Tang1, Y Sun1, D Buelow2, Z Gu2, A M Caliendo3, S Pounds1, R T Hayden4.   

Abstract

Given recent advances in the development of quantitative standards, particularly WHO international standards, efforts to better understand the commutability of reference materials have been made. Existing approaches in evaluating commutability include prediction intervals and correspondence analysis; however, the results obtained from existing approaches may be ambiguous. We have developed a "deviation-from-ideal" (DFI) approach to evaluate commutability of standards and applied it to the assessment of Epstein-Bar virus (EBV) load testing in four quantitative PCR assays, treating digital PCR as a reference assay. We then discuss advantages and limitations of the DFI approach as well as experimental design to best evaluate the commutability of an assay in practice.
Copyright © 2016, American Society for Microbiology. All Rights Reserved.

Mesh:

Year:  2016        PMID: 27076654      PMCID: PMC4879274          DOI: 10.1128/JCM.03346-15

Source DB:  PubMed          Journal:  J Clin Microbiol        ISSN: 0095-1137            Impact factor:   5.948


  22 in total

1.  Multicenter evaluation of a commercial cytomegalovirus quantitative standard: effects of commutability on interlaboratory concordance.

Authors:  R T Hayden; M D Shahbazian; A Valsamakis; J Boonyaratanakornkit; L Cook; X L Pang; J K Preiksaitis; E R Schönbrunner; A M Caliendo
Journal:  J Clin Microbiol       Date:  2013-09-11       Impact factor: 5.948

2.  Comparative evaluation of three commercial quantitative cytomegalovirus standards by use of digital and real-time PCR.

Authors:  R T Hayden; Z Gu; S S Sam; Y Sun; L Tang; S Pounds; A M Caliendo
Journal:  J Clin Microbiol       Date:  2015-02-18       Impact factor: 5.948

3.  Factors contributing to variability of quantitative viral PCR results in proficiency testing samples: a multivariate analysis.

Authors:  R T Hayden; X Yan; M T Wick; A B Rodriguez; X Xiong; C C Ginocchio; M J Mitchell; A M Caliendo
Journal:  J Clin Microbiol       Date:  2011-11-23       Impact factor: 5.948

4.  Multicenter comparison of different real-time PCR assays for quantitative detection of Epstein-Barr virus.

Authors:  R T Hayden; K M Hokanson; S B Pounds; M J Bankowski; S W Belzer; J Carr; D Diorio; M S Forman; Y Joshi; D Hillyard; R L Hodinka; M N Nikiforova; C A Romain; J Stevenson; A Valsamakis; H H Balfour
Journal:  J Clin Microbiol       Date:  2007-11-07       Impact factor: 5.948

5.  Marked variability of BK virus load measurement using quantitative real-time PCR among commonly used assays.

Authors:  Noah G Hoffman; Linda Cook; Ederlyn E Atienza; Ajit P Limaye; Keith R Jerome
Journal:  J Clin Microbiol       Date:  2008-06-18       Impact factor: 5.948

6.  A commutable cytomegalovirus calibrator is required to improve the agreement of viral load values between laboratories.

Authors:  Angela M Caliendo; Mona D Shahbazian; Carl Schaper; Jessica Ingersoll; Deborah Abdul-Ali; Jerry Boonyaratanakornkit; Xiao-Li Pang; Julie Fox; Jutta Preiksaitis; E Ralf Schönbrunner
Journal:  Clin Chem       Date:  2009-07-02       Impact factor: 8.327

7.  Polyomavirus polymerase chain reaction as a surrogate marker of polyomavirus-associated nephropathy.

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Review 8.  Role of Epstein-Barr virus DNA load monitoring in prevention and early detection of post-transplant lymphoproliferative disease.

Authors:  Servi J C Stevens; Erik A M Verschuuren; Sandra A W M Verkuujlen; Adriaan J C Van Den Brule; Chris J L M Meijer; Jaap M Middeldorp
Journal:  Leuk Lymphoma       Date:  2002-04

Review 9.  Viral diagnostics in the era of digital polymerase chain reaction.

Authors:  Ruth Hall Sedlak; Keith R Jerome
Journal:  Diagn Microbiol Infect Dis       Date:  2012-11-20       Impact factor: 2.803

10.  An international multicenter performance analysis of cytomegalovirus load tests.

Authors:  Hans H Hirsch; Irmeli Lautenschlager; Benjamin A Pinsky; Laura Cardeñoso; Shagufta Aslam; Bryan Cobb; Regis A Vilchez; Alexandra Valsamakis
Journal:  Clin Infect Dis       Date:  2012-10-24       Impact factor: 9.079

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  9 in total

Review 1.  Applications of Digital PCR for Clinical Microbiology.

Authors:  Jane Kuypers; Keith R Jerome
Journal:  J Clin Microbiol       Date:  2017-03-15       Impact factor: 5.948

2.  A Comprehensive Statistical Framework for Determination of Commutability, Accuracy, and Agreement in Clinical DNAemia Assays.

Authors:  L Tang; Y Su; Z Gu; A M Caliendo; S Pounds; R T Hayden
Journal:  J Clin Microbiol       Date:  2019-01-02       Impact factor: 5.948

Review 3.  The Future of Digital Polymerase Chain Reaction in Virology.

Authors:  Matthijs Vynck; Wim Trypsteen; Olivier Thas; Linos Vandekerckhove; Ward De Spiegelaere
Journal:  Mol Diagn Ther       Date:  2016-10       Impact factor: 4.074

4.  Quantitative Inference of Commutability for Clinical Viral Load Testing.

Authors:  L Tang; Y Su; S Pounds; R T Hayden
Journal:  J Clin Microbiol       Date:  2018-05-25       Impact factor: 5.948

Review 5.  Persistent Challenges of Interassay Variability in Transplant Viral Load Testing.

Authors:  R T Hayden; A M Caliendo
Journal:  J Clin Microbiol       Date:  2020-09-22       Impact factor: 5.948

6.  Matrix Matters: Assessment of Commutability among BK Virus Assays and Standards.

Authors:  R T Hayden; Y Su; J Boonyaratanakornkit; L Cook; Z Gu; K R Jerome; B A Pinsky; S S Sam; S K Tan; H Zhu; L Tang; A M Caliendo
Journal:  J Clin Microbiol       Date:  2022-08-23       Impact factor: 11.677

7.  Impact of Fragmentation on Commutability of Epstein-Barr Virus and Cytomegalovirus Quantitative Standards.

Authors:  R T Hayden; L Tang; Y Su; L Cook; Z Gu; K R Jerome; J Boonyaratanakornkit; S Sam; S Pounds; A M Caliendo
Journal:  J Clin Microbiol       Date:  2019-12-23       Impact factor: 11.677

8.  Circulating pre-treatment Epstein-Barr virus DNA as prognostic factor in locally-advanced nasopharyngeal cancer in a non-endemic area.

Authors:  Salvatore Alfieri; Nicola Alessandro Iacovelli; Sara Marceglia; Irene Lasorsa; Carlo Resteghini; Francesca Taverna; Arabella Mazzocchi; Ester Orlandi; Marco Guzzo; Roberto Bianchi; Diana Fanti; Laura Pala; Sara Racca; Roee Dvir; Pasquale Quattrone; Annunziata Gloghini; Chiara Costanza Volpi; Roberta Granata; Cristiana Bergamini; Laura Locati; Lisa Licitra; Paolo Bossi
Journal:  Oncotarget       Date:  2017-07-18

9.  Quantification of Torque Teno Virus and Epstein-Barr Virus Is of Limited Value for Predicting the Net State of Immunosuppression After Lung Transplantation.

Authors:  Rickard Nordén; Jesper Magnusson; Anna Lundin; Ka-Wei Tang; Staffan Nilsson; Magnus Lindh; Lars-Magnus Andersson; Gerdt C Riise; Johan Westin
Journal:  Open Forum Infect Dis       Date:  2018-03-06       Impact factor: 3.835

  9 in total

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