| Literature DB >> 27073411 |
Abstract
BACKGROUND:Entities:
Keywords: B3LYP; Cyanoform; MP2; PCM; Raman spectra; Tautomerization; Water-assisted proton transfer
Year: 2016 PMID: 27073411 PMCID: PMC4828767 DOI: 10.1186/s13065-016-0166-z
Source DB: PubMed Journal: Chem Cent J ISSN: 1752-153X Impact factor: 4.215
Scheme 1Tautomers form of cyanoform 1 and 2
Fig. 1Optimized structures of CF-CH, TS and CF-NH structures obtained at the B3LYP/6-311 ++G** level. Bond length is in Angstrom, charge distribution is natural charge
Total and relative energies for the studied species using two methods (B3LYP and MP2) at 6-311 ++G** basis set in the gas phase and in the solution
| Structure | Gas phase | Solvent | |||||||
|---|---|---|---|---|---|---|---|---|---|
| MP2 | B3LYP | MP2 | B3LYP | ||||||
| Et/au | kcal/mol | Et/au | kcal/mol | kcal/mol | |||||
| 1 | −316.40004 | 0.0 | −317.27785 | 0.000 | 0.0 | 0.0 | |||
| 2 | −316.37761 | Ere | 14.1 | −317.27506 | Ere | 1.8 | Ere | 13.4 | 0.7 |
| TS | −316.28143 | Ea | 77.5 | −316.79868 | Ea | 68.7 | Ea | 74.4 | 68.4 |
| CF− | −315.91668 | DP | 303.3 | −317.16841 | DP | 300.7 | DP | 272.7 | 262.6 |
| (CFH)+ | −316.70615 | PA(H) | −46.8 | −317.54566 | PA(H) | −168.1 | PA(H) | −230.1 | −231.4 |
E electronic energy, E relative energy between two tautomeric forms, E barrier energy, DP deprotonation energy, PA protonation energy
Fig. 2The barriers energy for the proton-transfer process of 1 assisted by one and two water molecule, with and without PCM–Water. Energies are in kcal/mol at the MP2 method at basis set 6-311 ++G**
Scheme 2An energy cycle used to calculate relative free energies of tautomers in water solution
The relative energies and relative free energies for the two tautomer’s using SMD and CPCM models at MP2/6-311 ++G** level of theory in water solution
| Structure | SMD | CPCM | ||
|---|---|---|---|---|
| Ere | ΔG | Ere | ΔG | |
|
| 0.0 | 0 | 0.0 | 0.0 |
|
| 14.6 |
| 14.1 | 26.4 |
The unit of energies is kcal/mol
Fig. 3Optimized structures, of two (left) and one (right) water-assisted transition states for the tautomerization of cyanoform computed at MP2/6-311 ++G** level of theory
Thermal energy parameters for the studied species using B3LYP/6-311 ++G** level of theory in solution at 260 and 300 K
| T = 260 K | T = 300 K | |||||
|---|---|---|---|---|---|---|
| H/au | G/au | S/Cal/Mol.K | H/au | G/au | S/Cal/Mol.K | |
|
| −317.2288 | −317.260935 | 77.565 | −317.22743 | −317.265745 | 80.639 |
|
| −317.22652 | −317.25843 | 77.013 | −317.22514 | −317.263208 | 80.121 |
Fig. 4Optimized structures of deprontaed and protonation species of 1 obtained at the B3LYP/6-311 ++G** level of theory. Bond length is in Angstrom
Fig. 5Calculated Raman frequencies (cm−1) (a) 1 and (b) 2 calculated at B3LYP/6-311 ++G** level of theory in the gas phase. Values were scaled by an empirical of 0.96
Observed [6] and calculated Raman frequencies (cm−1) (scaled by an empirical factor of 0.96) for 1 using B3LYP and MP2 methods at two basis sets 6-311 ++G** and aug-cc-pVQZ
| B3LYP | MP2 | PBE1PBE | ||||
|---|---|---|---|---|---|---|
| 6-311 ++G** | Aug-cc-pVQZ | 6-311 ++G** | Aug-cc-pVQZ | 6-311G (3df,3dp) | Observed | Assignment |
| 342 (3) | 337 (2) | 323 (3) | 316 (2) | 345 | 347 (45) | ∂ |
| 549 (5) | 551 (5) | 544 (4) | 541 (5) | 556 | 567 (16) | ∂ |
| 555 (2) | 553 (1) | 559 | 575 (7) | ∂ | ||
| 804 (6) | 808 (7) | 808 (7) | 801 (8) | 813 | 835 (24) |
|
| 985 (1) | 980 (1) | 995 (2) | 994 (1) | 1002 | 1022 (7) |
|
| 1238 (3) | 1239 (3) | 1247 (3) | 1239 (2) | 1232 | 1253 (5) | ∂ |
| 2281 (34) | 2284 (31) | 2093 (82) | 2098 (98) | 2310 | 2259 (7) |
|
| 2288 (160) | 2292 (175) | 2101 (18) | 2105 (18) | 2316 | 2287 (100) |
|
| 2895 (88) | 2894 (85) | 2960 (85) | 2956 (82) | 2922 | 2885 (38) |
|
Fig. 6The HOMO and LUMO frontier orbitals of the 1 and 2 tautomers. (The Isovalue = 0.05) using B3LYP/6-311 ++G** level of theory
Second order perturbation energy (E(2)) in NBO basis for 1 using B3LYP and MP2 methods at 6-311 ++G** basis set
| Donor | Type | Acceptor | Type | E(2) | |||
|---|---|---|---|---|---|---|---|
| B3LYP/6-311 ++G** | MP2/6-311 ++G** | ||||||
| 1 | 2 | 1 | 2 | ||||
|
|
|
|
| 3.53 | 5.26 | 4.25 | 6.14 |
|
|
|
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| 3.53 | 4.21 | 2.63 | 5.31 |
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|
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| 3.53 | 20.34 | 4.25 | 5.68 |
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| 5.69 | 7.37 | 9.19 | 9.62 |
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| 3.53 | 4.44 | 4.25 | 5.68 |
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| 3.53 | 4.21 | 4.25 | 5.31 |
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| 3.53 | 5.26 | 4.25 | 3.42 |
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| 5.69 | 7.48 | 9.91 | 4.27 |
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| 5.62 | 2.64 | 9.09 | |
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| 2.76 | 3.58 | ||
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| 5.62 | 6.68 | 8.60 | 8.62 |
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| 2.76 | 3.85 | ||
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| 2.19 | 3.57 | 2.65 | 4.32 |
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| 5.62 | 7.36 | 8.60 | 9.09 |
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| 2.76 | 3.85 | ||
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| 2.19 | 3.34 | 2.64 | 4.12 |
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| 2.19 | 6.46 | 2.64 | 5.21 |
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| 12.13 | 11.67 | 12.72 | 12.52 |
|
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| 12.13 | 31.61 | 12.72 | 78.33 |
|
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| 12.13 | 11.67 | 12.72 | 12.52 |
E(2) means energy of hyper conjugative interaction (stabilization energy)
*Non-bonding orbitals