Literature DB >> 27072488

A Tale of Two Cities: How Xist and its partners localize to and silence the bicompartmental X.

Stefan F Pinter1.   

Abstract

Sex chromosomal dosage compensation in mammals takes the form of X chromosome inactivation (XCI), driven by the non-coding RNA Xist. In contrast to dosage compensation systems of flies and worms, mammalian XCI has to restrict its function to the Xist-producing X chromosome, while leaving autosomes and active X untouched. The mechanisms behind the long-range yet cis-specific localization and silencing activities of Xist have long been enigmatic, but genomics, proteomics, super-resolution microscopy, and innovative genetic approaches have produced significant new insights in recent years. In this review, I summarize and integrate these findings with a particular focus on the redundant yet mutually reinforcing pathways that enable long-term transcriptional repression throughout the soma. This includes an exploration of concurrent epigenetic changes acting in parallel within two distinct compartments of the inactive X. I also examine how Polycomb repressive complexes 1 and 2 and macroH2A may bridge XCI establishment and maintenance. XCI is a remarkable phenomenon that operates across multiple scales, combining changes in nuclear architecture, chromosome topology, chromatin compaction, and nucleosome/nucleotide-level epigenetic cues. Learning how these pathways act in concert likely holds the answer to the riddle posed by Cattanach's and other autosomal translocations: What makes the X especially receptive to XCI?
Copyright © 2016 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Chromatin compaction; Chromosome topology; Gene silencing; Nuclear matrix; Pluripotency; Replication timing

Mesh:

Substances:

Year:  2016        PMID: 27072488     DOI: 10.1016/j.semcdb.2016.03.023

Source DB:  PubMed          Journal:  Semin Cell Dev Biol        ISSN: 1084-9521            Impact factor:   7.727


  10 in total

1.  Constitutive heterochromatin propagation contributes to the X chromosome inactivation.

Authors:  Alexander I Shevchenko; Nikita A Rifel; Suren M Zakian; Irina S Zakharova
Journal:  Chromosome Res       Date:  2022-08-03       Impact factor: 4.620

Review 2.  Capitalizing on disaster: Establishing chromatin specificity behind the replication fork.

Authors:  Srinivas Ramachandran; Kami Ahmad; Steven Henikoff
Journal:  Bioessays       Date:  2017-01-30       Impact factor: 4.345

3.  Chromosome compartments on the inactive X guide TAD formation independently of transcription during X-reactivation.

Authors:  Moritz Bauer; Enrique Vidal; Eduard Zorita; Nil Üresin; Stefan F Pinter; Guillaume J Filion; Bernhard Payer
Journal:  Nat Commun       Date:  2021-06-09       Impact factor: 14.919

4.  Xist RNA repeat E is essential for ASH2L recruitment to the inactive X and regulates histone modifications and escape gene expression.

Authors:  Minghui Yue; Akiyo Ogawa; Norishige Yamada; John Lalith Charles Richard; Artem Barski; Yuya Ogawa
Journal:  PLoS Genet       Date:  2017-07-07       Impact factor: 5.917

Review 5.  Function by Structure: Spotlights on Xist Long Non-coding RNA.

Authors:  Greta Pintacuda; Alexander N Young; Andrea Cerase
Journal:  Front Mol Biosci       Date:  2017-12-19

6.  CRISPR/Cas9-mediated modulation of splicing efficiency reveals short splicing isoform of Xist RNA is sufficient to induce X-chromosome inactivation.

Authors:  Minghui Yue; Yuya Ogawa
Journal:  Nucleic Acids Res       Date:  2018-03-16       Impact factor: 16.971

Review 7.  Non-Coding RNAs as Mediators of Epigenetic Changes in Malignancies.

Authors:  Subhasree Kumar; Edward A Gonzalez; Pranela Rameshwar; Jean-Pierre Etchegaray
Journal:  Cancers (Basel)       Date:  2020-12-05       Impact factor: 6.639

8.  Chd8 regulates X chromosome inactivation in mouse through fine-tuning control of Xist expression.

Authors:  Andrea Cerase; Alexander N Young; Nerea Blanes Ruiz; Andreas Buness; Gabrielle M Sant; Mirjam Arnold; Monica Di Giacomo; Michela Ascolani; Manish Kumar; Andreas Hierholzer; Giuseppe Trigiante; Sarah J Marzi; Philip Avner
Journal:  Commun Biol       Date:  2021-04-15

9.  Independent domains for recruitment of PRC1 and PRC2 by human XIST.

Authors:  Thomas Dixon-McDougall; Carolyn J Brown
Journal:  PLoS Genet       Date:  2021-03-22       Impact factor: 5.917

10.  Contiguous erosion of the inactive X in human pluripotency concludes with global DNA hypomethylation.

Authors:  Prakhar Bansal; Darcy T Ahern; Yuvabharath Kondaveeti; Catherine W Qiu; Stefan F Pinter
Journal:  Cell Rep       Date:  2021-06-08       Impact factor: 9.423

  10 in total

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