| Literature DB >> 27070610 |
Elisee Ilunga-Mbuyamba1, Juan Gabriel Avina-Cervantes2, Dirk Lindner3, Ivan Cruz-Aceves4, Felix Arlt5, Claire Chalopin6.
Abstract
In this paper, a method of vascular structure identification in intraoperative 3D Contrast-Enhanced Ultrasound (CEUS) data is presented. Ultrasound imaging is commonly used in brain tumor surgery to investigate in real time the current status of cerebral structures. The use of an ultrasound contrast agent enables to highlight tumor tissue, but also surrounding blood vessels. However, these structures can be used as landmarks to estimate and correct the brain shift. This work proposes an alternative method for extracting small vascular segments close to the tumor as landmark. The patient image dataset involved in brain tumor operations includes preoperative contrast T1MR (cT1MR) data and 3D intraoperative contrast enhanced ultrasound data acquired before (3D-iCEUS(start) and after (3D-iCEUS(end) tumor resection. Based on rigid registration techniques, a preselected vascular segment in cT1MR is searched in 3D-iCEUS(start) and 3D-iCEUS(end) data. The method was validated by using three similarity measures (Normalized Gradient Field, Normalized Mutual Information and Normalized Cross Correlation). Tests were performed on data obtained from ten patients overcoming a brain tumor operation and it succeeded in nine cases. Despite the small size of the vascular structures, the artifacts in the ultrasound images and the brain tissue deformations, blood vessels were successfully identified.Entities:
Keywords: 3D-iCEUS; cT1MR; neurosurgery; vascular structure identification
Mesh:
Substances:
Year: 2016 PMID: 27070610 PMCID: PMC4851011 DOI: 10.3390/s16040497
Source DB: PubMed Journal: Sensors (Basel) ISSN: 1424-8220 Impact factor: 3.576
Figure 1Patient image data acquired during tumor resection. The brain tumor (white arrow) is represented in the preoperative cT1MR data (a) and in the 3D-iCEUS (b) acquired at the beginning of the operation. After tumor removing, the resection cavity (indicated by two white arrows in (c) and (d) is well visible in the B-mode ultrasound image (c). In the 3D-iCEUS acquired at the end of the operation (d); the borders of the cavity can be easily interpreted as a blood vessel.
Figure 2Illustration of vascular structure segmentation in cT1MR, 3D-iCEUS and 3D-iCEUS.
Figure 3Process of the proposed vascular structure identification.
Figure 4Workflow of the proposed method.
Quantitative evaluation of the performance of three different similarity measures in the blood vessel registration algorithm using the DSI and the Hausdorff distance. The values in bold are the best obtained among the three similarity measures. * Indicate that the algorithm failed to find the correct vascular segment.
| Patient | Similarity Measure | ROI in cT1MR (voxels) | Blood Vessel Identification in the 3D-iCEUS | Blood Vessel Identification in the 3D-iCEUS | ||||
|---|---|---|---|---|---|---|---|---|
| Processing Time (s) | DSI | Hausdorff Distance (mm) | Processing Time (s) | DSI | Hausdorff Distance (mm) | |||
| NGF | 2.8 | 0.89 | 8.083 | 3.5 | 0.824 | 12.207 | ||
| 1 | NMI | 50 × 29 × 8 | 2 | 0.903 | 7.874 | 2.8 | 0.937 | 11.180 |
| NCC | ||||||||
| NGF | 11.1 | 0.645 | 21.772 | 14 | 0.813 | 11.180 | ||
| 2 | NMI | 19 × 37 × 26 | 2.3 | |||||
| NCC | 5.9 | 0.676 | 18.815 | 0.0 * | 14.071 * | |||
| NGF | 3.1 | 0.976 | 5.385 | 1.3 | ||||
| 3 | NMI | 35 × 16 × 13 | 2.9 | 0.263 * | 21.237 * | |||
| NCC | 0.979 | 5.385 | 0.5 | 0.0 * | 22.159 * | |||
| NGF | 5.7 | 0.766 | 12.369 | 1.5 | 0.829 | 9.487 | ||
| 4 | NMI | 15 × 17 × 22 | ||||||
| NCC | 0.9 | 0.839 | 9.274 | 7.4 | 0.825 | 9.487 | ||
| NGF | 2.1 | 13 | ||||||
| 5 | NMI | 61 × 55 × 8 | 2.2 | 0.422 * | 28.792 * | 0.38 | 34.015 * | |
| NCC | 0.408 * | 29.682 * | 6.7 | 0.674 | 32.016 | |||
| NGF | 0.0 * | 22.023 * | - | - | - | |||
| 6 | NMI | 8 × 39 × 26 | 1.8 | |||||
| NCC | 2.4 | 16.2 | 0.913 | 10.863 | ||||
| NGF | 17.6 | 56.6 | ||||||
| 7 | NMI | 49 × 56 × 29 | 11.3 | 0.827 | 29.653 | 30.2 | 0.051 * | 19.519 * |
| NCC | 0.983 | 28.530 | 0.0 * | 19.519 * | ||||
| NGF | 3.2 | |||||||
| 8 | MI | 32 × 14 × 19 | 2.9 | 0.031 * | 17.720 * | - | - | - |
| NCC | 0.097 * | 15.524 * | - | - | - | |||
| NGF | 3.1 | |||||||
| 9 | NMI | 31 × 22 × 22 | 0.475 * | 24.083 * | - | - | - | |
| NCC | 3.5 | 0.458 * | 25.729 * | - | - | - | ||
| NGF | 2.7 | 1.5 | ||||||
| 10 | NMI | 12 × 18 × 12 | 0.818 | 2.500 | 0.0 * | 8.464 * | ||
| NCC | 2.4 | 2.449 | 1.8 | 0.0 * | 8.718 * | |||
Mean DSI values and Hausdorff distances computed forthe three similarity measures and by comparison with the expert registration.
| Comparative Studies | Mean DSI (Algorithm, Expert) Computed after Registration in the: | Mean Hausdorff Distances in mm (Algorithm, Expert) Computed after Registration in the: | ||
|---|---|---|---|---|
| 3D-iCEUS | 3D-iCEUS | 33D-iCEUS | 3D-iCEUS | |
| NGF | ||||
| NMI | 0.838 | 0.832 | 15.116 | 15.570 |
| NCC | 0.815 | 0.852 | 15.198 | 15.950 |
Mean processing time in s during the registration computed for the successful cases (patient 10 excluded).
| Similarity Measure | cT1MR − 3D-iCEUS | 3D-iCEUS |
|---|---|---|
| NGF | 6.1 | 12.8 |
| NMI | 3.5 | |
| NCC | 8.0 |
Figure 5Illustration of vascular structures identification for five cases: (a) preoperative cT1MR; (b) vascular structure selection in cT1MR; (c) overlapping of vascular structure segmented in cT1MR on CEUS before registration; (d) overlapping of vascular structure segmented in cT1MR on CEUS after registration; (e) overlapping of vascular structure segmented in CEUS on CEUS before registration; (f) overlapping of vascular structure segmented in CEUS on CEUS after registration.
Figure 6Application of vascular structure identification in brain shift correction between cT1MR and 3D-iCEUS.