Literature DB >> 27070134

Scaling Up Scientific Discovery in Sleep Medicine: The National Sleep Research Resource.

Dennis A Dean1,2, Ary L Goldberger2,3,4, Remo Mueller1,2, Matthew Kim1,2, Michael Rueschman1, Daniel Mobley1, Satya S Sahoo5, Catherine P Jayapandian5, Licong Cui5, Michael G Morrical1, Susan Surovec1, Guo-Qiang Zhang6, Susan Redline1,2,3,7.   

Abstract

ABSTRACT: Professional sleep societies have identified a need for strategic research in multiple areas that may benefit from access to and aggregation of large, multidimensional datasets. Technological advances provide opportunities to extract and analyze physiological signals and other biomedical information from datasets of unprecedented size, heterogeneity, and complexity. The National Institutes of Health has implemented a Big Data to Knowledge (BD2K) initiative that aims to develop and disseminate state of the art big data access tools and analytical methods. The National Sleep Research Resource (NSRR) is a new National Heart, Lung, and Blood Institute resource designed to provide big data resources to the sleep research community. The NSRR is a web-based data portal that aggregates, harmonizes, and organizes sleep and clinical data from thousands of individuals studied as part of cohort studies or clinical trials and provides the user a suite of tools to facilitate data exploration and data visualization. Each deidentified study record minimally includes the summary results of an overnight sleep study; annotation files with scored events; the raw physiological signals from the sleep record; and available clinical and physiological data. NSRR is designed to be interoperable with other public data resources such as the Biologic Specimen and Data Repository Information Coordinating Center Demographics (BioLINCC) data and analyzed with methods provided by the Research Resource for Complex Physiological Signals (PhysioNet). This article reviews the key objectives, challenges and operational solutions to addressing big data opportunities for sleep research in the context of the national sleep research agenda. It provides information to facilitate further interactions of the user community with NSRR, a community resource.
© 2016 Associated Professional Sleep Societies, LLC.

Keywords:  big data; electrocardiography; polysomnography; precision medicine; signal processing; spectral analysis

Mesh:

Year:  2016        PMID: 27070134      PMCID: PMC4835314          DOI: 10.5665/sleep.5774

Source DB:  PubMed          Journal:  Sleep        ISSN: 0161-8105            Impact factor:   5.849


  44 in total

1.  PhysioNet: a research resource for studies of complex physiologic and biomedical signals.

Authors:  G B Moody; R G Mark; A L Goldberger
Journal:  Comput Cardiol       Date:  2000

2.  The NCBI dbGaP database of genotypes and phenotypes.

Authors:  Matthew D Mailman; Michael Feolo; Yumi Jin; Masato Kimura; Kimberly Tryka; Rinat Bagoutdinov; Luning Hao; Anne Kiang; Justin Paschall; Lon Phan; Natalia Popova; Stephanie Pretel; Lora Ziyabari; Moira Lee; Yu Shao; Zhen Y Wang; Karl Sirotkin; Minghong Ward; Michael Kholodov; Kerry Zbicz; Jeffrey Beck; Michael Kimelman; Sergey Shevelev; Don Preuss; Eugene Yaschenko; Alan Graeff; James Ostell; Stephen T Sherry
Journal:  Nat Genet       Date:  2007-10       Impact factor: 38.330

3.  Preparing for responsible sharing of clinical trial data.

Authors:  Michelle M Mello; Jeffrey K Francer; Marc Wilenzick; Patricia Teden; Barbara E Bierer; Mark Barnes
Journal:  N Engl J Med       Date:  2013-10-21       Impact factor: 91.245

4.  NIH's Big Data to Knowledge initiative and the advancement of biomedical informatics.

Authors:  Lucila Ohno-Machado
Journal:  J Am Med Inform Assoc       Date:  2014 Mar-Apr       Impact factor: 4.497

5.  Sleep disturbances and their correlates in elderly Japanese American men residing in Hawaii.

Authors:  S I Barbar; P L Enright; P Boyle; D Foley; D S Sharp; H Petrovitch; S F Quan
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2000-07       Impact factor: 6.053

6.  Trait-like individual differences in the human sleep electroencephalogram.

Authors:  J Buckelmüller; H-P Landolt; H H Stassen; P Achermann
Journal:  Neuroscience       Date:  2006-01-04       Impact factor: 3.590

7.  Challenges of Big Data Analysis.

Authors:  Jianqing Fan; Fang Han; Han Liu
Journal:  Natl Sci Rev       Date:  2014-06       Impact factor: 17.275

8.  Prevalence and risk factors for sleep-disordered breathing in 8- to 11-year-old children: association with race and prematurity.

Authors:  Carol L Rosen; Emma K Larkin; H Lester Kirchner; Judith L Emancipator; Sarah F Bivins; Susan A Surovec; Richard J Martin; Susan Redline
Journal:  J Pediatr       Date:  2003-04       Impact factor: 4.406

9.  Prevalence and correlates of periodic limb movements in older women.

Authors:  David M Claman; Susan Redline; Terri Blackwell; Sonia Ancoli-Israel; Susan Surovec; Nancy Scott; Jane A Cauley; Kristine E Ensrud; Katie L Stone
Journal:  J Clin Sleep Med       Date:  2006-10-15       Impact factor: 4.062

10.  A randomized trial of adenotonsillectomy for childhood sleep apnea.

Authors:  Carole L Marcus; Reneé H Moore; Carol L Rosen; Bruno Giordani; Susan L Garetz; H Gerry Taylor; Ron B Mitchell; Raouf Amin; Eliot S Katz; Raanan Arens; Shalini Paruthi; Hiren Muzumdar; David Gozal; Nina Hattiangadi Thomas; Janice Ware; Dean Beebe; Karen Snyder; Lisa Elden; Robert C Sprecher; Paul Willging; Dwight Jones; John P Bent; Timothy Hoban; Ronald D Chervin; Susan S Ellenberg; Susan Redline
Journal:  N Engl J Med       Date:  2013-05-21       Impact factor: 91.245

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  80 in total

1.  Prevalence and Characteristics of Central Compared to Obstructive Sleep Apnea: Analyses from the Sleep Heart Health Study Cohort.

Authors:  Lucas M Donovan; Vishesh K Kapur
Journal:  Sleep       Date:  2016-07-01       Impact factor: 5.849

2.  ProvCaRe: Characterizing scientific reproducibility of biomedical research studies using semantic provenance metadata.

Authors:  Satya S Sahoo; Joshua Valdez; Matthew Kim; Michael Rueschman; Susan Redline
Journal:  Int J Med Inform       Date:  2018-11-03       Impact factor: 4.046

Review 3.  The future of sleep health: a data-driven revolution in sleep science and medicine.

Authors:  Ignacio Perez-Pozuelo; Bing Zhai; Joao Palotti; Raghvendra Mall; Michaël Aupetit; Juan M Garcia-Gomez; Shahrad Taheri; Yu Guan; Luis Fernandez-Luque
Journal:  NPJ Digit Med       Date:  2020-03-23

4.  ProvCaRe Semantic Provenance Knowledgebase: Evaluating Scientific Reproducibility of Research Studies.

Authors:  Joshua Valdez; Matthew Kim; Michael Rueschman; Vimig Socrates; Susan Redline; Satya S Sahoo
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

5.  SpindleSphere: A Web-based Platform for Large-scale Sleep Spindle Analysis and Visualization.

Authors:  Xiaojin Li; Licong Cui; Shiqiang Tao; Ningzhou Zeng; Guo-Qiang Zhang
Journal:  AMIA Annu Symp Proc       Date:  2018-04-16

6.  Evaluation of an automated pipeline for large-scale EEG spectral analysis: the National Sleep Research Resource.

Authors:  Sara Mariani; Leila Tarokh; Ina Djonlagic; Brian E Cade; Michael G Morrical; Kristine Yaffe; Katie L Stone; Kenneth A Loparo; Shaun M Purcell; Susan Redline; Daniel Aeschbach
Journal:  Sleep Med       Date:  2017-11-29       Impact factor: 3.492

Review 7.  Opportunities for utilizing polysomnography signals to characterize obstructive sleep apnea subtypes and severity.

Authors:  Diego R Mazzotti; Diane C Lim; Kate Sutherland; Lia Bittencourt; Jesse W Mindel; Ulysses Magalang; Allan I Pack; Philip de Chazal; Thomas Penzel
Journal:  Physiol Meas       Date:  2018-09-13       Impact factor: 2.833

8.  Symptom Subtypes of Obstructive Sleep Apnea Predict Incidence of Cardiovascular Outcomes.

Authors:  Diego R Mazzotti; Brendan T Keenan; Diane C Lim; Daniel J Gottlieb; Jinyoung Kim; Allan I Pack
Journal:  Am J Respir Crit Care Med       Date:  2019-08-15       Impact factor: 21.405

9.  The Sleep Apnea-Specific Hypoxic Burden Predicts Incident Heart Failure.

Authors:  Ali Azarbarzin; Scott A Sands; Luigi Taranto-Montemurro; Daniel Vena; Tamar Sofer; Sang-Wook Kim; Katie L Stone; David P White; Andrew Wellman; Susan Redline
Journal:  Chest       Date:  2020-04-13       Impact factor: 9.410

10.  Quantifying statistical uncertainty in metrics of sleep disordered breathing.

Authors:  Robert J Thomas; Shuqiang Chen; Uri T Eden; Michael J Prerau
Journal:  Sleep Med       Date:  2019-06-13       Impact factor: 3.492

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