| Literature DB >> 27069596 |
Helena Hespanhol1, Katia Cezón2, Ángel M Felicísimo3, Jesús Muñoz4, Rubén G Mateo5.
Abstract
A large amount of data for inconspicuous taxa is stored in natural history collections; however, this information is often neglected for biodiversity patterns studies. Here, we evaluate the performance of direct interpolation of museum collections data, equivalent to the traditional approach used in bryophyte conservation planning, and stacked species distribution models (S-SDMs) to produce reliable reconstructions of species richness patterns, given that differences between these methods have been insufficiently evaluated for inconspicuous taxa. Our objective was to contrast if species distribution models produce better inferences of diversity richness than simply selecting areas with the higher species numbers. As model species, we selected Iberian species of the genus Grimmia (Bryophyta), and we used four well-collected areas to compare and validate the following models: 1) four Maxent richness models, each generated without the data from one of the four areas, and a reference model created using all of the data and 2) four richness models obtained through direct spatial interpolation, each generated without the data from one area, and a reference model created with all of the data. The correlations between the partial and reference Maxent models were higher in all cases (0.45 to 0.99), whereas the correlations between the spatial interpolation models were negative and weak (-0.3 to -0.06). Our results demonstrate for the first time that S-SDMs offer a useful tool for identifying detailed richness patterns for inconspicuous taxa such as bryophytes and improving incomplete distributions by assessing the potential richness of under-surveyed areas, filling major gaps in the available data. In addition, the proposed strategy would enhance the value of the vast number of specimens housed in biological collections.Entities:
Keywords: Biodiversity conservation; biological collections; bryophytes; richness models; species distribution models
Year: 2015 PMID: 27069596 PMCID: PMC4813098 DOI: 10.1002/ece3.1796
Source DB: PubMed Journal: Ecol Evol ISSN: 2045-7758 Impact factor: 2.912
Figure 1Collection localities resampled at 10 × 10 km pixel size. 1 – Creu Casas' extensive and intensive collections across the Pyrenees and Francisco Lloret's PhD; 2 – PhD thesis data of Helena Hespanhol (NW Portugal); 3 – PhD thesis data of Katia Cezón (Castilla‐La Mancha); 4 – PhD thesis data of Susana Rams (Sierra Nevada). (A) The background represents the digital elevation model, white dots opportunistic sampling localities, and black dots systematically sampled areas. (B) The background represents the number of Grimmia species according to an Inverse Distance Weighting (IDW) interpolation using information from all of the collection localities. The number of different Grimmia species per collection locality is represented by graduated circles.
Figure 2Percentage of collection localities (100 km2 pixels) by Grimmia species count for (A) opportunistic sampling localities and (B) systematically sampled localities.
Correlation between the reference and partial models.a
| Area tested for correlation, data excluded from the model generation | Presences | Reference IDW vs. Partial IDW | Reference Maxent vs. Partial Maxent |
|---|---|---|---|
| Area 1 | 492 | −0.2099 | 0.9888 |
| Area 2 | 484 | −0.0659 | 0.6564 |
| Area 3 | 426 | −0.325 | 0.4504 |
| Area 4 | 523 | −0.0558 | 0.9954 |
The reference models were generated using all of the presence data. For each partial model, the presences of the corresponding area were removed, and that window area was then used for the correlation calculation. The correlation between the reference IDW and Maxent models for the entire Iberian Peninsula was 0.1542. Areas as in Figure 1.
Figure 3Maxent richness model of Grimmia for the Iberian Peninsula. (A) Overlap between the richness model (background) and number of species recorded per 100 km2 pixel. (B) and (C) Examples of areas in the Iberian Peninsula for which the richest areas according to the Maxent model match (solid lines) and do not match (dotted lines) the richest areas with more taxa recorded in the natural history collections.
Maxent test AUC obtained by 10‐fold cross‐validation.a
| Species | Unique presences | Area 1 | Area 2 | Area 3 | Area 4 | Reference model |
|---|---|---|---|---|---|---|
|
| 23 | 0.9927 | 0.9934 | 0.9939 | 0.9929 | 0.994 |
|
| 8 | 0.8983 | 0.9033 | 0.9033 | 0.8576 | 0.9033 |
|
| 20 | 0.9818 | 0.9858 | 0.9855 | 0.985 | 0.9859 |
|
| 25 | 0.9655 | 0.965 | 0.9713 | 0.9703 | 0.9705 |
|
| 203 | 0.8585 | 0.8106 | 0.8704 | 0.8592 | 0.8596 |
|
| 19 | 0.7555 | 0.9522 | 0.9539 | 0.9559 | 0.9528 |
|
| 41 | 0.9426 | 0.8927 | 0.9419 | 0.945 | 0.9492 |
|
| 130 | 0.8617 | 0.7767 | 0.8751 | 0.8591 | 0.8526 |
|
| 74 | 0.8213 | 0.8396 | 0.7792 | 0.8238 | 0.8165 |
|
| 178 | 0.9287 | 0.8829 | 0.9364 | 0.9257 | 0.9312 |
|
| 149 | 0.8695 | 0.8769 | 0.8924 | 0.8611 | 0.8627 |
|
| 28 | 0.7952 | 0.8442 | 0.8425 | 0.831 | 0.8421 |
|
| 229 | 0.8176 | 0.81 | 0.8552 | 0.8103 | 0.806 |
|
| 12 | 0.963 | 0.9774 | 0.9615 | 0.954 | 0.9477 |
|
| 9 | 0.9778 | 0.9883 | 0.9883 | 0.9621 | 0.9883 |
|
| 16 | 0.8135 | 0.8858 | 0.5898 | 0.8589 | 0.8375 |
|
| 9 | 0.9007 | 0.9104 | 0.9617 | 0.8726 | 0.9007 |
|
| 180 | 0.7447 | 0.7135 | 0.752 | 0.7386 | 0.7397 |
Areas as in Figure 1.