Literature DB >> 21563566

Ecological niche modeling in Maxent: the importance of model complexity and the performance of model selection criteria.

Dan L Warren1, Stephanie N Seifert.   

Abstract

Maxent, one of the most commonly used methods for inferring species distributions and environmental tolerances from occurrence data, allows users to fit models of arbitrary complexity. Model complexity is typically constrained via a process known as L1 regularization, but at present little guidance is available for setting the appropriate level of regularization, and the effects of inappropriately complex or simple models are largely unknown. In this study, we demonstrate the use of information criterion approaches to setting regularization in Maxent, and we compare models selected using information criteria to models selected using other criteria that are common in the literature. We evaluate model performance using occurrence data generated from a known "true" initial Maxent model, using several different metrics for model quality and transferability. We demonstrate that models that are inappropriately complex or inappropriately simple show reduced ability to infer habitat quality, reduced ability to infer the relative importance of variables in constraining species' distributions, and reduced transferability to other time periods. We also demonstrate that information criteria may offer significant advantages over the methods commonly used in the literature.

Mesh:

Year:  2011        PMID: 21563566     DOI: 10.1890/10-1171.1

Source DB:  PubMed          Journal:  Ecol Appl        ISSN: 1051-0761            Impact factor:   4.657


  261 in total

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4.  Expert-based versus habitat-suitability models to develop resistance surfaces in landscape genetics.

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5.  Ancient human disturbances may be skewing our understanding of Amazonian forests.

Authors:  Crystal N H McMichael; Frazer Matthews-Bird; William Farfan-Rios; Kenneth J Feeley
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6.  Distribution modeling of Amblyomma rotundatum and Amblyomma dissimile in Brazil: estimates of environmental suitability.

Authors:  Gina Polo; Hermes R Luz; André Luis Regolin; Thiago F Martins; Gisele R Winck; Hélio R da Silva; Valeria C Onofrio; Marcelo B Labruna; João L H Faccini
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Authors:  Annett Frick; Franziska Tanneberger; Jochen Bellebaum
Journal:  Environ Manage       Date:  2014-01-21       Impact factor: 3.266

8.  Pleistocene speciation in the genus Populus (salicaceae).

Authors:  Nicholas D Levsen; Peter Tiffin; Matthew S Olson
Journal:  Syst Biol       Date:  2012-01-02       Impact factor: 15.683

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Authors:  K Jeannet Oyen; Laura E Jardine; Zachary M Parsons; James D Herndon; James P Strange; Jeffrey D Lozier; Michael E Dillon
Journal:  J Comp Physiol B       Date:  2021-06-25       Impact factor: 2.200

10.  Potential areas for the establishment of citrus leprosis virus vectors, Brevipalpus spp., in Mexico.

Authors:  Carmen Asunción Castro-Resendiz; Gabriel Otero-Colina; Juan Ángel Quijano-Carranza; Enrique Martínez-Meyer; Héctor González-Hernández; Carlos Cuellar-Zambrano; Lauro Soto-Rojas
Journal:  Exp Appl Acarol       Date:  2021-06-01       Impact factor: 2.132

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