| Literature DB >> 27069443 |
Tarja Rajalahti1, Chenchen Lin2, Svein Are Mjøs3, Olav Martin Kvalheim4.
Abstract
INTRODUCTION: The lipid metabolism is one of the most important and complex processes in the body. Serum concentrations of 18 fatty acids (FAs) and 24 lipoprotein features, i.e. concentrations of lipoprotein main and subclasses and average particle size in main classes, in 195 ethnic Norwegian children from the rural Fjord region were quantified by chromatography.Entities:
Keywords: Docosahexaenoic acid (DHA); Eicosapentaenoic acid (EPA); Fatty acids; Human serum; Lipoprotein subclasses; Prepubertal healthy children
Year: 2016 PMID: 27069443 PMCID: PMC4792365 DOI: 10.1007/s11306-016-1020-y
Source DB: PubMed Journal: Metabolomics ISSN: 1573-3882 Impact factor: 4.290
Univariate statistical measures calculated for fatty acids for the pre-puberty children
| Variable | Boys (N = 117) | Girls (N = 78) | pWMW | ||||
|---|---|---|---|---|---|---|---|
| Median | Min | Max | Median | Min | Max | ||
| 14:0 | 36.0 | 15.0 | 134.7 | 37.6 | 13.9 | 83.6 | 0.0966 |
| 16:0 | 764.6 | 432.3 | 1203.2 | 804.3 | 472.1 | 1359.1 | 0.1623 |
| 16:1 n-9 | 12.8 | 6.5 | 25.1 | 14.5 | 6.7 | 26.8 | 0.0237 |
| 16:1 n-7 | 65.3 | 24.1 | 154.9 | 74.8 | 25.3 | 164.4 | 0.0401 |
| 18:0 | 300.0 | 156.1 | 524.7 | 307.3 | 187.4 | 537.1 | 0.3862 |
| 18:1 n-9 | 731.9 | 442.1 | 1362.3 | 776.2 | 351.3 | 1317.7 | 0.1631 |
| 18:1 n-7 | 45.9 | 28.1 | 78.4 | 50.5 | 26.6 | 86.4 | 0.0025** |
| 18:2 n-6 (LA) | 1061.3 | 559.1 | 1767.9 | 1094.0 | 683.3 | 1837.3 | 0.2571 |
| 18:3 n-3 (ALA) | 23.6 | 9.4 | 58.9 | 25.2 | 11.2 | 60.0 | 0.1466 |
| 20:3 n-6 (DGLA) | 61.7 | 26.8 | 101.5 | 62.0 | 30.7 | 110.2 | 0.9866 |
| 20:4 n-6 (AA) | 244.4 | 113.8 | 445.7 | 247.9 | 127.5 | 430.7 | 0.9370 |
| 22:0 | 33.9 | 15.3 | 62.9 | 35.5 | 21.2 | 66.1 | 0.1126 |
| 20:5 n-3 (EPA) | 29.3 | 9.1 | 128.9 | 29.3 | 13.3 | 89.8 | 0.8714 |
| 24:0 | 32.0 | 12.9 | 58.4 | 32.8 | 20.1 | 61.9 | 0.4348 |
| 22:5 n-6 | 5.3 | 2.3 | 10.7 | 5.4 | 1.6 | 11.5 | 0.4900 |
| 24:1 n-9 | 52.7 | 21.3 | 97.3 | 54.7 | 32.8 | 106.5 | 0.0676 |
| 22:5 n-3 (DPA) | 28.3 | 17.3 | 45.6 | 28.4 | 15.4 | 44.1 | 0.7807 |
| 22:6 n-3 (DHA) | 73.8 | 34.6 | 153.5 | 79.4 | 35.3 | 206.6 | 0.3504 |
| TFA | 3610.9 | 2014.1 | 5730.8 | 3896.0 | 2151.9 | 5765.2 | 0.1702 |
| EPA/AA | 0.116 | 0.044 | 0.386 | 0.117 | 0.047 | 0.315 | 0.9535 |
Median, min and max values are given in units of μg per g sample. The column headed by pWMW provides the p values calculated from the nonparametric Wilcoxon–Mann–Whitney (WMW) rank sum test (Wilcoxon 1945; Mann and Whitney 1947). Taking into account the effect of multiple testing on the probability levels show that pWMW = 0.0025 corresponds to p = 0.05 whether the Bonferroni correction or the false discovery rate (FDR) of Benjamini and Hochberg (1995) is used. Gender differences that are significant at p = 0.05 after correcting for multiple testing are marked with two asterisks
Univariate statistical measures calculated for fatty acids for the pre-puberty children
| Variable | Boys (N = 117) | Girls (N = 78) | pWMW | ||||
|---|---|---|---|---|---|---|---|
| Median | Min | Max | Median | Min | Max | ||
| Chol | 163.6 | 118.3 | 236.1 | 164.7 | 107.1 | 254.5 | 0.5829 |
| TG | 49.7 | 17.3 | 137.1 | 65.9 | 20.8 | 135.8 | 0.0083* |
| CM | 0.64 | 0 | 10.9 | 1.12 | 0 | 14.8 | 0.0618 |
| VLDL | 44.0 | 14.0 | 141.2 | 59.9 | 10.4 | 123.5 | 0.0019** |
| LDL | 99.1 | 63.5 | 149.9 | 100.2 | 51.1 | 180.6 | 0.3970 |
| HDL | 67.3 | 42.0 | 99.0 | 63.1 | 44.7 | 99.9 | 0.0057* |
| VLDL-VL | 7.6 | 1.1 | 48.5 | 13.0 | 1.5 | 51.3 | 0.0062* |
| VLDL-L | 11.5 | 0 | 42.1 | 19.1 | 0 | 43.2 | 0.0003** |
| VLDL-M | 12.1 | 2.5 | 36.2 | 14.5 | 4.0 | 35.2 | 0.0130* |
| VLDL-S | 13.0 | 6.5 | 22.3 | 13.5 | 7.1 | 24.4 | 0.3722 |
| LDL-L | 39.7 | 23.2 | 55.2 | 38.9 | 23.9 | 59.8 | 0.7619 |
| LDL-M | 46.1 | 25.8 | 69.0 | 46.8 | 25.7 | 84.2 | 0.3451 |
| LDL-S | 12.2 | 3.0 | 28.4 | 12.9 | 2.5 | 28.6 | 0.0824 |
| LDL-VS | 4.7 | 1.6 | 10.9 | 4.9 | 1.1 | 11.8 | 0.0646 |
| HDL-VL | 3.8 | 1.5 | 10.8 | 3.7 | 2.0 | 9.9 | 0.3778 |
| HDL-L | 16.0 | 3.3 | 38.0 | 13.9 | 5.2 | 38.3 | 0.1327 |
| HDL-M | 24.4 | 14.4 | 33.9 | 22.6 | 15.1 | 32.1 | 0.0010** |
| HDL-S | 18.0 | 12.6 | 24.4 | 17.3 | 11.9 | 23.1 | 0.0556 |
| HDL-VS | 5.4 | 3.4 | 10.5 | 5.4 | 3.1 | 9.4 | 0.8137 |
| VLDL-Size | 41.3 | 36.0 | 47.1 | 43.0 | 37.7 | 48.2 | 0.0043* |
| LDL-Size | 26.19 | 25.71 | 26.79 | 26.14 | 25.74 | 26.49 | 0.1123 |
| HDL-Size | 10.91 | 10.23 | 11.54 | 10.91 | 10.46 | 11.44 | 0.4079 |
| ApoA1 | 138.0a | 91.1 | 187.0 | 127.1b | 106.1 | 175.0 | 0.0591 |
| ApoB | 66.4a | 47.4 | 86.0 | 65.42 | 49.0 | 107.0 | 0.5290 |
Median, min and max concentrations are given in units of mg per dl serum, while particle size is given as nm. pWMW are the p values calculated from the nonparametric Wilcoxon-Mann–Whitney (WMW) rank sum test (Wilcoxon 1945; Mann and Whitney 1947). Taking into account the effect of multiple testing on the probability levels show that pWMW = 0.0021 corresponds to p = 0.05 using the Bonferroni correction. Using instead the false discovery rate (FDR) of Benjamini and Hochberg (1995) for multiple testing, pWMW = 0.0167 corresponds to p = 0.05. Gender differences that are significant at p = 0.05 after the Bonferroni correction are marked with two asterisks, while differences that are significant by FDR at p = 0.05 are marked with one asterisk
aN = 55
bN = 38
Fig. 1Principal component (PC) scores before (a, b) and after (c, d) the median difference correction (Rajalahti et al. 2016) to reduce systematic analytical differences between the three batches. Five samples from run 1 were reanalyzed in run 2 and 3. Pairs of replicates can be identified by possessing the same number with one replicate containing an R in the sample id
Lipoprotein features modelled from the fatty acid profiles, children (N = 195)
| Variable | R2Ya | Q2Yb | FAs ranked after importance in model |
|---|---|---|---|
| Chol | 0.36 | 0.26 | DPA (0.45)c, DGLA, 18:1 n-7, 16:1 n-7, TFA, 16:0, AA (0.38) |
| TG | 0.73 | 0.70 | 14:0 (0.61), 16:1 n-9, 16:1 n-7, 18:1 n-9, ALA (0.46) |
| CM | 0.61 | 0.58 | 14:0 (0.65), 16:1 n-9, 16:1 n-7, 18:1 n-9, ALA (0.44) |
| VLDL | 0.68 | 0.62 | 16:1 n-9 (0.62), 16:1 n-7, 18:1 n-9, 14:0, 18:1 n-7 (0.47) |
| LDL | 0.34 | 0.21 | 18:1 n-7 (0.35), 16:1 n-7, TFA, 16:0, 18:1 n-9, DPA, LA (0.34) |
| HDL | 0.16 | 0.08 | 24:0 (0.21), 22:0, AA (0.16) |
| VLDL-VL | 0.67 | 0.64 | 14:0 (0.59), 16:1 n-9, 16:1 n-7, 18:1 n-9, ALA (0.43) |
| VLDL-L | 0.63 | 0.58 | 16:1 n-7 (0.59), 16:1 n-9, 18:1 n-9, 18:1 n-7, 14:0, ALA (0.39) |
| VLDL-M | 0.49 | 0.41 | 16:1 n-9 (0.52), 18:1 n-9, 18:1 n-7, 16:1 n-7, ALA (0.38) |
| VLDL-S | 0.29 | 0.22 | 16:1 n-9 (0.46), 16:1 n-7, 16:0, 18:1 n-9, 18:1 n-7, 14:0, TFA (0.39) |
| LDL-L | 0.16 | 0.12 | TFA (0.39), 16:0, 18:0, 18:1 n-7, DPA, LA (0.34) |
| LDL-M | 0.33 | 0.20 | 18:1 n-7 (0.31) 16:1 n-7, TFA, 18:1 n-9, 16:0, LA, DPA (0.30) |
| LDL-S | 0.38 | 0.24 | DPA (0.29), LA, 16:1 n-7, TFA, 18:1 n-7 (0.28) |
| LDL-VS | 0.40 | 0.26 | DPA (0.33), 16:1 n-7, LA, TFA, 18:1 n-7 (0.30) |
| HDL-VL | 0.18 | 0.11 | 24:0 (0.26), 22:0, AA (0.16) |
| HDL-L | 0.20 | 0.13 | 24:0 (0.19), 22:0, AA (0.12) |
| HDL-M | 0.20 | 0.08 | 24:0 (0.17), 22:0, 18:0, 16:1 n-7 (-), 18:1 n-7 (-), AA (0.10) |
| HDL-S | 0.36 | 0.28 | 16:1 n-9 (0.30), 14:0, DGLA, 18:1 n-9, 16:1 n-7 (0.27) |
| HDL-VS | 0.21 | 0.09 | DGLA (0.25), DPA, 16:1 n-9, 22:5 n-6, 16:1 n-7 (0.18) |
| VLDL-size | 0.53 | 0.49 | 14:0 (0.52), 16:1 n-9, 16:1 n-7, 18:1 n-9, ALA (0.32) |
| LDL-size | No predictive model | ||
| HDL-size | 0.22 | 0.15 | 14:0 (-0.24), 16:1 n-7 (-), 16:1 n-9 (-0.24) |
| ApoA1 | 0.30 | 0.18 | 24:0 (0.27), ALA (-), AA, 22:0 (0.23) |
| ApoB | 0.15 | 0.08 | Tot FA (0.35), 16:0, 18:0, DGLA (0.28) |
aR2Y implies the squared Pearson correlation coefficient between measured and modelled lipoprotein feature
bQ2Y implies the squared Pearson correlation coefficient between measured and independently predicted values for the lipoprotein feature using RDCV (Westerhuis et al. 2008). Q2Y is calculated as the average of 100 repetitions with 10 % of ssamples in outer loop
cPearson´s correlation coefficient estimated from the raw data, see Supplementary Material 3
Fig. 2Dendrogram from agglomerative hierarchical cluster analysis calculated from average-linkage using Euclidean distance as metric. The dendrogram maps the correlation patterns (Supplementary Material 3) between each of the 24 lipoprotein feature (Table 2) and the 20 FA features (Table 1)
Fig. 3Selectivity ratio (SR) plot for model of average size of HDL particles (HDL-Size) with the 18 FAs, TFA and EPA/AA in Table 1 as input. Features with positive sign are increasing with HDL-size, while features with negative sign are decreasing. The confidence limits around each feature correspond to p = 0.05 and is obtained from RDCV