| Literature DB >> 27067024 |
Andres F Vallejo1, Nora L Martinez1, Alejandra Tobon1, Jackeline Alger2, Marcus V Lacerda3, Andrey V Kajava4,5, Myriam Arévalo-Herrera6,7, Sócrates Herrera8.
Abstract
BACKGROUND: Plasmodium vivax 48/45 protein is expressed on the surface of gametocytes/gametes and plays a key role in gamete fusion during fertilization. This protein was recently expressed in Escherichia coli host as a recombinant product that was highly immunogenic in mice and monkeys and induced antibodies with high transmission-blocking activity, suggesting its potential as a P. vivax transmission-blocking vaccine candidate. To determine sequence polymorphism of natural parasite isolates and its potential influence on the protein structure, all pvs48/45 sequences reported in databases from around the world as well as those from low-transmission settings of Latin America were compared.Entities:
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Year: 2016 PMID: 27067024 PMCID: PMC4828788 DOI: 10.1186/s12936-016-1263-0
Source DB: PubMed Journal: Malar J ISSN: 1475-2875 Impact factor: 2.979
Origin of Latin American isolates used for pvs48/45 sequencing
| Country | Department | Locality | N |
|---|---|---|---|
| Brazil | Amazonas | Manaus | 14 |
| Honduras | El Paraiso | Moroceli | 1 |
| Olancho | Catacamas | 2 | |
| Juticalpa | 1 | ||
| Francisco Morazan | Talanga | 2 | |
| Tegucigalpa (CMDC) | 2 | ||
| Gracias a Dios | Pto. Lempira | 1 | |
| Wampusirpi | 2 | ||
| Colombia | Cordoba | Tierralta | 10 |
| Nariño | Tumaco | 10 | |
| Valle del Cauca | Buenaventura | 8 | |
| Choco | Quibdó | 7 |
Fig. 1Nucleotide changes found and nucleotide diversity. a Structural architecture of Pvs48/45 reported by van Dijk [6]. Cysteine residues are depicted as small black bars under the three cysteine-rich domains (CRD), non-synonymous substitutions are shown by solid arrows, whereas synonymous substitutions by dashed arrows. b Sliding-window analysis of nucleotide diversity (π) along the Pvs48/45 gene using a length of 100 sites and a step-size of 25 sites
Amino acid changes found in the seven pvs48/45 haplotypes in Latin American isolates
| Amino acid position | n | Frequency (%) | |||||||
|---|---|---|---|---|---|---|---|---|---|
| 108 | 211 | 250 | 264 | 324 | 353 | 370 | |||
| Sal I | T | H | K | P | N | E | K | 68 | 25.1 |
| I | – | N | N | – | – | Q | – | 35 | 12.9 |
| II | – | – | N | – | – | Q | – | 9 | 3.3 |
| III | – | – | – | – | – | Q | – | 2 | 0.7 |
| IV | A | – | N | – | – | Q | – | 4 | 1.5 |
| V | – | N | N | – | – | Q | N | 83 | 30.6 |
| VI | – | – | – | H | – | – | – | 64 | 23.6 |
| VII | – | – | N | – | S | – | – | 6 | 2.2 |
Estimates of DNA sequence polymorphism and tests of neutrality for pvs48/45
| Country | Total isolates | SV sites | PI sites | # Mutations |
| H | Hd ± SD | π ± SD | dN | dS | Reference |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Mexico | 15 | 0 | 2 | 2 | 0.441 | 2 | 0.221 ± 0.121 | 0.00033 ± 0.00033 | 0.00042 | 0.00000 | This study |
| Honduras | 12 | 3 | 2 | 5 | 1.128 | 4 | 0.445 ± 0.170 | 0.00123 ± 0.00094 | 0.00136 | 0.00077 | This study |
| Colombia | 60 | 3 | 4 | 7 | 1.929 | 9 | 0.841 ± 0.024 | 0.00188 ± 0.00073 | 0.00185 | 0.002 | This study |
| Peru | 24 | 1 | 2 | 3 | 0.372 | 3 | 0.218 ± 0.103 | 0.00034 ± 0.00046 | 0.00045 | 0.00000 | This study |
| Brazil | 13 | 2 | 1 | 3 | 0.59 | 4 | 0.526 ± 0.153 | 0.00058 ± 0.00062 | 0.00019 | 0.00194 | This study |
| Latin America | 124 | 3 | 5 | 8 | 1.228 | 11 | 0.610 ± 0.047 | 0.00168 ± 0.00087 | 0.00176 | 0.00151 | This study |
| Myanmar | 8 | 2 | 5 | 7 | 2.722 | 5 | 0.889 ± 0.071 | 0.00216 ± 0.00110 | 0.00282 | 0.0000 | This study |
| Thailand | 18 | 5 | 4 | 9 | 1.392 | 5 | 0.484 ± 0.138 | 0.00116 ± 0.00101 | 0.00103 | 0.00085 | This study |
| South Korea | 86 | 0 | 2 | 2 | 0.716 | 3 | 0.611 ± 0.026 | 0.00053 ± 0.00004 | 0.00069 | 0.00000 | [ |
| North Korea | 46 | 2 | 7 | 9 | 1.987 | 5 | 0.0018 ± 0.042 | 0.00147 ± 0.00069 | 0.00029 | 0.00186 | [ |
| Worldwide | 282 | 7 | 5 | 12 | 1.047 | 15 | 0.686 ± 0.00149 | 0.00173 ± 0.00149 | 0.00188 | 0.00149 | This study |
SV singleton variable, PI parsimony informative, K average number of pair-wise differences, H number of haplotypes, Hd haplotype diversity, π observed average pair-wise nucleotide diversity, dN number of non-synonymous substitutions, dS number of synonymous substitutions
Fig. 2Distribution of pvs48/45 haplotypes. Geographic distribution of pvs48/45 haplotypes is shown for Mexico, Honduras, Brazil, Colombia, Myanmar, Thailand, South Korea, and North Korea. Haplotypes I–VII are shown in different colours
Potential antigenic determinants for the Pvs48/45
| # Antigenic region | AA start | AA end | Length | Score | Polymorphism | Sequencea |
|---|---|---|---|---|---|---|
| 1 | 4 | 19 | 16 | 1.235 | None | RQLANLLLVLSLLRGI |
| 2 | 46 | 64 | 19 | 1.083 | None | GFKCNFSSKGVHNLEPILT |
| 3 | 66 | 90 | 25 | 1.197 | None | KRSLVCSIYSYFIYDKIKLTIPKKI |
| 4 | 99 | 109 | 11 | 1.129 | None | PEKCFQTVYTN |
| 5 | 165 | 189 | 25 | 1.206 | None | ISNVKGRVALVQVNVLKYPHKITSI |
| 6 | 220 | 237 | 18 | 1.228 | None | GELVVLACEKVDDKCFKK |
| 7 | 242 | 304 | 63 | 1.154 | K250N | SPLSLYKSKKIVYHKNLSIFKAPVYVKSADVTAECSCNVDSTIYTLSLKPVYTKKLIHGCNFS |
| 8 | 326 | 341 | 16 | 1.138 | D335Y | QITCSIELVDTSYNHL |
| 9 | 347 | 361 | 15 | 1.167 | E353Q | PGEVLPECFFQVYQR |
| 10 | 366 | 377 | 12 | 1.141 | A376T | LEPSKIVYLDAQ |
| 11 | 394 | 404 | 11 | 1.152 | None | IVKIFGLVGSI |
| 12 | 422 | 447 | 26 | 1.255 | None | YMSVKIAAGYFGFLAKIFILLIVLLL |
aItalics AA indicates Cysteine residues, whereas Bold italics AA represent the location of polymorphic sites
Fig. 3A ribbon representation of 3D models of the Pvs48/45 domains. Space-filling representation of amino-acid side chains (red, blue and yellow balls) denotes the locations of the non-synonymous amino acid substitutions in the three cysteine-rich domains (CRD)