| Literature DB >> 27066095 |
Masoud Maleki Zadeh1, Nasrin Motamed1, Najmeh Ranji2, Mohammad Majidi3, Fahimeh Falahi4.
Abstract
PURPOSE: MicroRNAs (miRNAs) have received much attention owing to their aberrant expression in various stages of cancer. In many biological processes, miRNAs negatively regulate gene expression, and may be useful in therapeutic strategies. The present study evaluated the effects of silibinin (silybin), a natural flavonoid, on miRNA expression and attempted to elucidate therapeutic targets in MCF-7 breast cancer cells.Entities:
Keywords: Apoptosis; MCF-7 cells; MicroRNAs; Silybin
Year: 2016 PMID: 27066095 PMCID: PMC4822106 DOI: 10.4048/jbc.2016.19.1.45
Source DB: PubMed Journal: J Breast Cancer ISSN: 1738-6756 Impact factor: 3.588
Sequence of primers used for polymerase chain reaction analyses
| Gene | Primer | Length of production (bp) |
|---|---|---|
| 5'-TGCCAGCTTCAGGATCTAC-3' | 277 | |
| 5'-TCTCACTGACTGCACAATCCTTTT-3' | ||
| 5'-AGGGTCGCTAATGCTGTTTCG-3' | 267 | |
| 5'-TCGTCAATCTGGAAGCTGCTAAG-3' | ||
| 5'-GGAGGAGGACCGGAACAGG-3' | 158 | |
| 5'-GAAAGACATCACGGAGCAAGGAC-3' | ||
| 5'-GGAGTATTTGGATGACAGAAAC-3' | 181 | |
| 5'-GATTACCACTGGAGTCTTC-3' | ||
| 5'-GAAGGTGAAGGTCGGAGTC-3' | 226 | |
| 5'-GAAGATGGTGATGGGATTTC-3' |
APAF1=apoptotic peptidase activating factor 1; CASP9=caspase 9; BID=BH3 interacting domain death agonist; GAPDH=glyceraldehyde-3-phosphate dehydrogenase.
Figure 1Cell viability after silibinin induction. MCF7 cells treated with different concentration of silibinin (0–300 µg/mL) were cultured for 24 to 72 hours. Viability of cells was measured by MTT assay. Results were representative of three experiments and each concentration was repeated at least four times in each experiment. The results are presented as mean±SD.
Figure 2Percentage of cells in phases after silibinin (0, 100, and 150 µg/mL) induction. Flow cytometric analysis identified the percent of cells in each phase after staining with propidium iodide (PI) during 24 hours (A) and 48 hours (B). The results are presented as mean±SD.
Symbols indicate significant difference between cell groups. *p<0.05; †p<0.01.
Figure 3Relative expression of miR-21 and miR-155 in silibinin (100 µg/mL)-treated and untreated cells. Relative expression of miR-21 and miR-155 was normalized to U6 small nuclear RNA as an endogenous control. Representative data from three experiments are shown. The results are represented as mean±SD.
*p<0.05; †p<0.01.
Potential targets of miR-21 and miR-155
| microRNA | Potential target | Gene name |
|---|---|---|
| miR-21 | Apoptotic peptidase activating factor 1 | |
| ATM serine/threonine kinase | ||
| B-cell CLL/lymphoma 2 | ||
| BH3 interacting domain death agonist | ||
| Caspase 2, apoptosis-related cysteine peptidase | ||
| Caspase 3, apoptosis-related cysteine peptidase | ||
| Caspase 6, apoptosis-related cysteine peptidase | ||
| Caspase 8, apoptosis-related cysteine peptidase | ||
| Caspase 9, apoptosis-related cysteine peptidase | ||
| Caspase 10, apoptosis-related cysteine peptidase | ||
| Cytochrome c | ||
| E2F transcription factor 2 | ||
| Fas (TNFRSF6)-associated via death domain | ||
| Fas cell surface death receptor | ||
| Fas ligand (TNF superfamily, member 6) | ||
| MDM2 proto-oncogene, E3 ubiquitin protein ligase | ||
| Programmed cell death 4 | ||
| Phosphatase and tensin homolog | ||
| Retinoblastoma 1 | ||
| Tumor protein p53 binding protein 2 | ||
| miR-155 | Apoptotic peptidase activating factor 1 | |
| BCL2-like 11 (apoptosis facilitator) | ||
| BH3 interacting domain death agonist | ||
| Caspase 2, apoptosis-related cysteine peptidase | ||
| Caspase 3, apoptosis-related cysteine peptidase | ||
| Caspase 6, apoptosis-related cysteine peptidase | ||
| Caspase 9, apoptosis-related cysteine peptidase | ||
| Caspase 10, apoptosis-related cysteine peptidase | ||
| E2F transcription factor 2 | ||
| Fas (TNFRSF6)-associated via death domain | ||
| Fas cell surface death receptor | ||
| Forkhead box O3 | ||
| Programmed cell death 4 (neoplastic transformation inhibitor) | ||
| Phosphatase and tensin homolog |
Target prediction is based on predicted by algorithms including TargetScan, Diana microT, mirDB, and miRWalk. The listed genes are predicted by at least four prediction programs. The most likely apoptosis-related genes are listed here.
Figure 4Quantitative expression of BID, APAF-1 and CASP-9 in silibinin-treated cells compared to silibinin untreated ones. Relative expression of these genes was normalized to GAPDH. Representative data from three experiments are shown. The results are represented as mean±SD.
APAF-1=apoptotic peptidase activating factor 1; BID=BH3 interacting domain death agonist; CASP-9=caspase 9; GAPDH=glyceraldehyde 3-phosphate dehydrogenase.
*p<0.05; †p<0.01; ‡p<0.001.