Literature DB >> 27065185

Correction: Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Daniel Garrido-Sanz, Jan P Meier-Kolthoff, Markus Göker, Marta Martín, Rafael Rivilla, Miguel Redondo-Nieto.   

Abstract

Entities:  

Year:  2016        PMID: 27065185      PMCID: PMC4827820          DOI: 10.1371/journal.pone.0153733

Source DB:  PubMed          Journal:  PLoS One        ISSN: 1932-6203            Impact factor:   3.240


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There are errors in the names of type strains appearing in Figs 1 and 2 and S1 Fig. P. aureofaciens LMG 2145 should be P. aureofaciens 1245. P. amygdali LMG1384 should be P. amygdali 13184. P. resinovorans LMG 2774 should be P. resinovorans LMG 2274. P. mandelii LMG 2210 should be P. mandelii LMG 21607. P. luteola LMG 21607 should be P. luteola LMG 7041. Please see the corrected Figs 1 and 2 and S1 Fig here.
Fig 1

Phylogeny of the Pseudomonas genus inferred by MLSA.

Phylogenetic tree of 451 Pseudomonas strains along with 107 type strains based on the concatenated partial sequences of the 16S rDNA, gyrB, rpoD and rpoB, ML method, Tamura-Nei. Only bootstrap values above 75% (from 1,000 replicates) are shown. Cellvibrio japonicum Ueda 107 was used as outgroup. Details are found in S1 Fig.

Fig 2

Phylogeny of the P. fluorescens complex inferred by MLSA.

Phylogenetic tree of 127 sequenced and type strains belonging to the P. fluorescens complex based on the concatenated partial sequences of the 16S rDNA, gyrB, rpoD and rpoB genes, the ML method and the Tamura-Nei model. Only bootstrap values above 50% (from 1,000 replicates) are shown. The P. aeruginosa type strain was used as outgroup. Bold text as well as superscript T indicates type strains. Strains are colored according to the groups established in this work.

Phylogeny of the Pseudomonas genus inferred by MLSA.

Phylogenetic tree of 451 Pseudomonas strains along with 107 type strains based on the concatenated partial sequences of the 16S rDNA, gyrB, rpoD and rpoB, ML method, Tamura-Nei. Only bootstrap values above 75% (from 1,000 replicates) are shown. Cellvibrio japonicum Ueda 107 was used as outgroup. Details are found in S1 Fig.

Phylogeny of the P. fluorescens complex inferred by MLSA.

Phylogenetic tree of 127 sequenced and type strains belonging to the P. fluorescens complex based on the concatenated partial sequences of the 16S rDNA, gyrB, rpoD and rpoB genes, the ML method and the Tamura-Nei model. Only bootstrap values above 50% (from 1,000 replicates) are shown. The P. aeruginosa type strain was used as outgroup. Bold text as well as superscript T indicates type strains. Strains are colored according to the groups established in this work.

Pseudomonas genus MLSA.

MLSA based on partial sequences of 16S rDNA, gyrB, rpoD and rpoB genes from 451 sequenced genomes and 107 type strains (bold), ML method and Tamura-Nei model. C. japonicus Ueda 107 was used as outgroup. Only bootstrap values above 75% over 1000 replicates are shown. Bold and T indicates type strain. (PDF) Click here for additional data file.
  1 in total

1.  Genomic and Genetic Diversity within the Pseudomonas fluorescens Complex.

Authors:  Daniel Garrido-Sanz; Jan P Meier-Kolthoff; Markus Göker; Marta Martín; Rafael Rivilla; Miguel Redondo-Nieto
Journal:  PLoS One       Date:  2016-02-25       Impact factor: 3.240

  1 in total
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6.  Comparative genomics of the Pseudomonas corrugata subgroup reveals high species diversity and allows the description of Pseudomonas ogarae sp. nov.

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