Literature DB >> 27064127

Beyond the outer limits of nature by directed evolution.

Patricia Molina-Espeja1, Javier Viña-Gonzalez1, Bernardo J Gomez-Fernandez1, Javier Martin-Diaz1, Eva Garcia-Ruiz2, Miguel Alcalde3.   

Abstract

For more than thirty years, biotechnology has borne witness to the power of directed evolution in designing molecules of industrial relevance. While scientists all over the world discuss the future of molecular evolution, dozens of laboratory-designed products are being released with improved characteristics in terms of turnover rates, substrate scope, catalytic promiscuity or stability. In this review we aim to present the most recent advances in this fascinating research field that are allowing us to surpass the limits of nature and apply newly gained attributes to a range of applications, from gene therapy to novel green processes. The use of directed evolution in non-natural environments, the generation of catalytic promiscuity for non-natural reactions, the insertion of unnatural amino acids into proteins or the creation of unnatural DNA, is described comprehensively, together with the potential applications in bioremediation, biomedicine and in the generation of new bionanomaterials. These successful case studies show us that the limits of directed evolution will be defined by our own imagination, and in some cases, stretching beyond that.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Biomedicine; Bionanomaterials; Bioremediation; Directed evolution; Gene therapy; Non-natural biocatalysis; Non-natural environments; Unnatural DNA; Unnatural amino acids

Mesh:

Substances:

Year:  2016        PMID: 27064127     DOI: 10.1016/j.biotechadv.2016.03.008

Source DB:  PubMed          Journal:  Biotechnol Adv        ISSN: 0734-9750            Impact factor:   14.227


  7 in total

Review 1.  Learning Strategies in Protein Directed Evolution.

Authors:  Xavier F Cadet; Jean Christophe Gelly; Aster van Noord; Frédéric Cadet; Carlos G Acevedo-Rocha
Journal:  Methods Mol Biol       Date:  2022

2.  Alanine substitution in cellobiohydrolase provides new insights into substrate threading.

Authors:  Shigenobu Mitsuzawa; Maiko Fukuura; Satoru Shinkawa; Keiichi Kimura; Tadaomi Furuta
Journal:  Sci Rep       Date:  2017-11-24       Impact factor: 4.379

3.  When directed evolution met ancestral enzyme resurrection.

Authors:  Miguel Alcalde
Journal:  Microb Biotechnol       Date:  2016-11-11       Impact factor: 5.813

4.  Machine Learning Identifies Chemical Characteristics That Promote Enzyme Catalysis.

Authors:  Brian M Bonk; James W Weis; Bruce Tidor
Journal:  J Am Chem Soc       Date:  2019-02-21       Impact factor: 15.419

Review 5.  Protein Engineering: Advances in Phage Display for Basic Science and Medical Research.

Authors:  Elena K Davydova
Journal:  Biochemistry (Mosc)       Date:  2022-01       Impact factor: 2.487

6.  Directed -in vitro- evolution of Precambrian and extant Rubiscos.

Authors:  Bernardo J Gomez-Fernandez; Eva Garcia-Ruiz; Javier Martin-Diaz; Patricia Gomez de Santos; Paloma Santos-Moriano; Francisco J Plou; Antonio Ballesteros; Monica Garcia; Marisa Rodriguez; Valeria A Risso; Jose M Sanchez-Ruiz; Spencer M Whitney; Miguel Alcalde
Journal:  Sci Rep       Date:  2018-04-03       Impact factor: 4.379

7.  Unsupervised Inference of Protein Fitness Landscape from Deep Mutational Scan.

Authors:  Jorge Fernandez-de-Cossio-Diaz; Guido Uguzzoni; Andrea Pagnani
Journal:  Mol Biol Evol       Date:  2021-01-04       Impact factor: 16.240

  7 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.