| Literature DB >> 27057351 |
Preety Vatsyayan1, Pranab Goswami2.
Abstract
A hydrocarbon degrading Aspergillus terreus MTCC 6324 produces a high level of extremely active and stable cellular large catalase (CAT) during growth on n-hexadecane to combat the oxidative stress caused by the hydrocarbon degrading metabolic machinery inside the cell. A 160-fold purification with specific activity of around 66 × 10(5) U mg(-1) protein was achieved. The native protein molecular mass was 368 ± 5 kDa with subunit molecular mass of nearly 90 kDa, which indicates that the native CAT protein is a homotetramer. The isoelectric pH (pI) of the purified CAT was 4.2. BLAST aligned peptide mass fragments of CAT protein showed its highest similarity with the catalase B protein from other fungal sources. CAT was active in a broad range of pH 4 to 12 and temperature 25°C to 90°C. The catalytic efficiency (K cat/K m ) of 4.7 × 10(8) M(-1) s(-1) within the studied substrate range and alkaline pH stability (half-life, t 1/2 at pH 12~15 months) of CAT are considerably higher than most of the extensively studied catalases from different sources. The storage stability (t 1/2) of CAT at physiological pH 7.5 and 4°C was nearly 30 months. The haem was identified as haem b by electrospray ionization tandem mass spectroscopy (ESI-MS/MS).Entities:
Year: 2016 PMID: 27057351 PMCID: PMC4807065 DOI: 10.1155/2016/4379403
Source DB: PubMed Journal: Enzyme Res ISSN: 2090-0414
Scheme 1A schematic representation of metabolic machinery involved in hydrocarbon utilisation inside the cells of A. terreus that produces high level of H2O2 as byproduct which is then neutralised by CAT. CYP: cytochrome P450 monoxygenase and AOx: alcohol oxidase. (diagram not to scale).
Purification table for CAT.
| Fractions | Activity | Protein | Specific activity | Fold | Yield % |
|---|---|---|---|---|---|
| crude extract | 1.2 ± 0.5 | 2.9 ± 0.8 | 0.41 ± 0.10 | 1.0 | 100 |
| sup-1a | 1.7 ± 0.3 | 1.8 ± 0.5 | 0.94 ± 0.20 | 2.3 | 88.6 |
| pellet-1a | 2.7 ± 0.8 | 5.4 ± 1.0 | 0.50 ± 0.09 | 1.2 | 10.8 |
| sup-2b | 2.3 ± 0.4 | 1.4 ± 0.3 | 1.64 ± 0.60 | 4.0 | 75.0 |
| pellet-2b | 0.3 ± 0.1 | 7.2 ± 1.2 | 0.04 ± 0.01 | 0.1 | 12.4 |
| 50% pelletc | 2.4 ± 0.7 | 7.2 ± 1.9 | 0.33 ± 0.10 | 0.8 | 10.1 |
| 80% pelletc | 3.3 ± 1.2 | 1.4 ± 0.5 | 2.36 ± 0.50 | 5.8 | 62.5 |
| HIC purifiedd | 14.7 ± 1.4 | 0.5 ± 0.1 | 29.40 ± 1.42 | 71.7 | 54.4 |
| SEC purified | 39.6 ± 2.0 | 0.6 ± 0.1 | 66.00 ± 3.97 | 160.9 | 47.0 |
asup-1 and pellet-1 are supernatant and pellet of 10,000 ×g centrifugation.
bsup-2 and pellet-2 are supernatant and pellet of 20,000 ×g centrifugation.
c50% and 80% pellet are (NH4)2SO4 precipitated fractions.
dHIC purified fraction was eluted at 250 mM (NH4)2SO4 concentration.
Each value represents the mean ± standard error at p < 0.05.
Figure 1PAGE analysis of purified CAT. (a) Native PAGE: lane 1, CBB staining of CAT and lane 2, activity staining of CAT (loaded 10 μg purified protein). (b) SDS-PAGE: lane 1, CBB staining of CAT protein and lane 2, CBB staining of standard molecular markers.
Figure 2(a) MS spectrum of the extracted haem from the native purified CAT. The sample was run in the ESI positive mode. Details of the experiment and results are discussed in the paper. (b) FTIR spectra of the isolated haem. Peaks corresponding to the representative functional groups of haem are shown in the figure.
Multiple sequence alignment of amino acid residues of proximal haem binding domain of CAT with other known catalases.
| Catalase source organism | Amino acid sequence | Accession code |
|---|---|---|
|
| R L F S | This work |
|
| R L F S | XP_001216098.1 |
|
| R L F S | XP_001388621.1 |
|
| R L F S | XP_682608.1 |
|
| R L F S | XP_748550.1 |
|
| R L F S | XP_002153601.1 |
|
| R L F S | XP_957826.1 |
|
| R L F S | YP_001174038.1 |
|
| R L F S | YP_002293177.1 |
|
| R L F S | YP_954009.1 |
|
| R L F S | dbj|BAD77826.1 |
|
| R V F S | emb|CAA64220.1 |
|
| R L F A | NP_036652.1 |
|
| R L F A | NP_001030463.1 |
|
| R L F A | NP_001743.1 |
Figure 3CAT activity as a function of pH (a) and temperature (b). The different pH buffers (each at a concentration of 50 mM) were trisodium citrate (pH 2.5 to 4), sodium acetate (pH 5), sodium phosphate (pH 6 to 7.5), tris (pH 8), ethanolamine (pH 9), and sodium phosphate (pH 10 to 12.5). Each datum point represents the average of the analysis of triplicate values.