Literature DB >> 27052956

Polymorphism of rs3737597 in DISC1 Gene on Chromosome 1q42.2 in sALS Patients: a Chinese Han Population Case-Control Study.

Libin Deng1,2, Liwei Huo3, Jie Zhang4,2, Xiaoli Tang2, Zhujun Cheng1, Gang Li2, Xin Fang4, Jinsong Xu5, Xiong Zhang6, Renshi Xu7.   

Abstract

Although lots of genes have been revealed to relate to sporadic amyotrophic lateral sclerosis (sALS), its genetic mechanisms still need to be further explored. We aimed to search the novel genetic factors of sALS and assess their contribution. We constructed an integrative dataset based on the 3227 subsignificant genes (P value < 0.01) from two sALS-related genome-wide association studies (GWAS) (the US and Irish studies). A significant replication between both studies was confirmed by the gene set enrichment analysis in the integral level (P value < 10-4). Using the pathway overrepresentation analysis, we revealed the 34 shared Gene Ontology (GO) biological processes from the two independent studies (P value < 0.01). Among these pathways, the nervous system developmental pathway (NSD function, GO:0007399) was further supported by the previously reported genes related to sALS (P value = 3.28e-12). Importantly, four of 17 NSD-function-related target genes (disrupted-in-schizophrenia-1 (DISC1), CNTN4, NRXN3, and ERBB4) presented a considerable association with sALS in both studies. To further verify the association between the NSD function target genes and sALS, we preformed a two-stage case-control study based on 500 sALS patients and 500 controls of Chinese Han populations from mainland. A polymorphism of rs3737597 in DISC1 gene involved in the nervous system developmental pathway was closely associated with sALS. The nervous system developmental pathway is a potential pathogenesis of sALS, among them, the polymorphism of rs3737597 in DISC1 might play some roles.

Entities:  

Keywords:  DISC1 gene; Nervous system developmental pathway; Sporadic amyotrophic lateral sclerosis

Mesh:

Substances:

Year:  2016        PMID: 27052956     DOI: 10.1007/s12035-016-9869-3

Source DB:  PubMed          Journal:  Mol Neurobiol        ISSN: 0893-7648            Impact factor:   5.590


  47 in total

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Journal:  Nat Genet       Date:  2013-04-28       Impact factor: 38.330

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Journal:  Neurology       Date:  1994-10       Impact factor: 9.910

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4.  ITPR2 as a susceptibility gene in sporadic amyotrophic lateral sclerosis: a genome-wide association study.

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6.  Identifying consensus disease pathways in Parkinson's disease using an integrative systems biology approach.

Authors:  Yvonne J K Edwards; Gary W Beecham; William K Scott; Sawsan Khuri; Guney Bademci; Demet Tekin; Eden R Martin; Zhijie Jiang; Deborah C Mash; Jarlath ffrench-Mullen; Margaret A Pericak-Vance; Nicholas Tsinoremas; Jeffery M Vance
Journal:  PLoS One       Date:  2011-02-22       Impact factor: 3.240

7.  Reduced expression of the Kinesin-Associated Protein 3 (KIFAP3) gene increases survival in sporadic amyotrophic lateral sclerosis.

Authors:  John E Landers; Judith Melki; Vincent Meininger; Jonathan D Glass; Leonard H van den Berg; Michael A van Es; Peter C Sapp; Paul W J van Vught; Diane M McKenna-Yasek; Hylke M Blauw; Ting-Jan Cho; Meraida Polak; Lijia Shi; Anne-Marie Wills; Wendy J Broom; Nicola Ticozzi; Vincenzo Silani; Aslihan Ozoguz; Ildefonso Rodriguez-Leyva; Jan H Veldink; Adrian J Ivinson; Christiaan G J Saris; Betsy A Hosler; Alayna Barnes-Nessa; Nicole Couture; John H J Wokke; Thomas J Kwiatkowski; Roel A Ophoff; Simon Cronin; Orla Hardiman; Frank P Diekstra; P Nigel Leigh; Christopher E Shaw; Claire L Simpson; Valerie K Hansen; John F Powell; Philippe Corcia; François Salachas; Simon Heath; Pilar Galan; Franck Georges; H Robert Horvitz; Mark Lathrop; Shaun Purcell; Ammar Al-Chalabi; Robert H Brown
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-18       Impact factor: 11.205

8.  Genome-wide genotyping in amyotrophic lateral sclerosis and neurologically normal controls: first stage analysis and public release of data.

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Journal:  Lancet Neurol       Date:  2007-04       Impact factor: 44.182

9.  WEB-based GEne SeT AnaLysis Toolkit (WebGestalt): update 2013.

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10.  Age of onset of amyotrophic lateral sclerosis is modulated by a locus on 1p34.1.

Authors:  Kreshnik B Ahmeti; Senda Ajroud-Driss; Ammar Al-Chalabi; Peter M Andersen; Jennifer Armstrong; Anne Birve; Hylke M Blauw; Robert H Brown; Lucie Bruijn; Wenjie Chen; Adriano Chio; Mary C Comeau; Simon Cronin; Frank P Diekstra; Athina Soraya Gkazi; Jonathan D Glass; Josh D Grab; Ewout J Groen; Jonathan L Haines; Orla Hardiman; Scott Heller; Jie Huang; Wu-Yen Hung; James M Jaworski; Ashley Jones; Humaira Khan; John E Landers; Carl D Langefeld; P Nigel Leigh; Miranda C Marion; Russell L McLaughlin; Vincent Meininger; Judith Melki; Jack W Miller; Gabriele Mora; Margaret A Pericak-Vance; Evadnie Rampersaud; Wim Robberecht; Laurie P Russell; Francois Salachas; Christiaan G Saris; Aleksey Shatunov; Christopher E Shaw; Nailah Siddique; Teepu Siddique; Bradley N Smith; Robert Sufit; Simon Topp; Bryan J Traynor; Caroline Vance; Philip van Damme; Leonard H van den Berg; Michael A van Es; Paul W van Vught; Jan H Veldink; Yi Yang; J G Zheng
Journal:  Neurobiol Aging       Date:  2012-09-05       Impact factor: 4.673

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Authors:  Cheng Li; Yu Zhu; Wenzhi Chen; Menghua Li; Mi Yang; Ziyang Shen; Yiyi Zhou; Lulu Wang; Huan Wang; Shu Li; Jiacheng Ma; Mengni Gong; Renshi Xu
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