Literature DB >> 27049946

Modulation of tissue repair by regeneration enhancer elements.

Junsu Kang1, Jianxin Hu2, Ravi Karra3, Amy L Dickson1, Valerie A Tornini1, Gregory Nachtrab1, Matthew Gemberling1, Joseph A Goldman1, Brian L Black2, Kenneth D Poss1.   

Abstract

How tissue regeneration programs are triggered by injury has received limited research attention. Here we investigate the existence of enhancer regulatory elements that are activated in regenerating tissue. Transcriptomic analyses reveal that leptin b (lepb) is highly induced in regenerating hearts and fins of zebrafish. Epigenetic profiling identified a short DNA sequence element upstream and distal to lepb that acquires open chromatin marks during regeneration and enables injury-dependent expression from minimal promoters. This element could activate expression in injured neonatal mouse tissues and was divisible into tissue-specific modules sufficient for expression in regenerating zebrafish fins or hearts. Simple enhancer-effector transgenes employing lepb-linked sequences upstream of pro- or anti-regenerative factors controlled the efficacy of regeneration in zebrafish. Our findings provide evidence for 'tissue regeneration enhancer elements' (TREEs) that trigger gene expression in injury sites and can be engineered to modulate the regenerative potential of vertebrate organs.

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Year:  2016        PMID: 27049946      PMCID: PMC4844022          DOI: 10.1038/nature17644

Source DB:  PubMed          Journal:  Nature        ISSN: 0028-0836            Impact factor:   49.962


  53 in total

1.  Histone H3K27ac separates active from poised enhancers and predicts developmental state.

Authors:  Menno P Creyghton; Albert W Cheng; G Grant Welstead; Tristan Kooistra; Bryce W Carey; Eveline J Steine; Jacob Hanna; Michael A Lodato; Garrett M Frampton; Phillip A Sharp; Laurie A Boyer; Richard A Young; Rudolf Jaenisch
Journal:  Proc Natl Acad Sci U S A       Date:  2010-11-24       Impact factor: 11.205

2.  Neuregulin stimulation of cardiomyocyte regeneration in mice and human myocardium reveals a therapeutic window.

Authors:  Brian D Polizzotti; Balakrishnan Ganapathy; Stuart Walsh; Sangita Choudhury; Niyatie Ammanamanchi; David G Bennett; Cristobal G dos Remedios; Bernhard J Haubner; Josef M Penninger; Bernhard Kühn
Journal:  Sci Transl Med       Date:  2015-04-01       Impact factor: 17.956

Review 3.  Limb regeneration: a new development?

Authors:  Eugen Nacu; Elly M Tanaka
Journal:  Annu Rev Cell Dev Biol       Date:  2011-07-29       Impact factor: 13.827

Review 4.  Signaling networks organizing regenerative growth of the zebrafish fin.

Authors:  Daniel Wehner; Gilbert Weidinger
Journal:  Trends Genet       Date:  2015-04-27       Impact factor: 11.639

5.  Transient regenerative potential of the neonatal mouse heart.

Authors:  Enzo R Porrello; Ahmed I Mahmoud; Emma Simpson; Joseph A Hill; James A Richardson; Eric N Olson; Hesham A Sadek
Journal:  Science       Date:  2011-02-25       Impact factor: 47.728

6.  The regenerative capacity of zebrafish reverses cardiac failure caused by genetic cardiomyocyte depletion.

Authors:  Jinhu Wang; Daniela Panáková; Kazu Kikuchi; Jennifer E Holdway; Matthew Gemberling; James S Burris; Sumeet Pal Singh; Amy L Dickson; Yi-Fan Lin; M Khaled Sabeh; Andreas A Werdich; Deborah Yelon; Calum A Macrae; Kenneth D Poss
Journal:  Development       Date:  2011-07-13       Impact factor: 6.868

7.  Retinoic acid production by endocardium and epicardium is an injury response essential for zebrafish heart regeneration.

Authors:  Kazu Kikuchi; Jennifer E Holdway; Robert J Major; Nicola Blum; Randall D Dahn; Gerrit Begemann; Kenneth D Poss
Journal:  Dev Cell       Date:  2011-03-15       Impact factor: 12.270

Review 8.  Advances in understanding tissue regenerative capacity and mechanisms in animals.

Authors:  Kenneth D Poss
Journal:  Nat Rev Genet       Date:  2010-09-14       Impact factor: 53.242

9.  A large genomic deletion leads to enhancer adoption by the lamin B1 gene: a second path to autosomal dominant adult-onset demyelinating leukodystrophy (ADLD).

Authors:  Elisa Giorgio; Daniel Robyr; Malte Spielmann; Enza Ferrero; Eleonora Di Gregorio; Daniele Imperiale; Giovanna Vaula; Georgios Stamoulis; Federico Santoni; Cristiana Atzori; Laura Gasparini; Denise Ferrera; Claudio Canale; Michel Guipponi; Len A Pennacchio; Stylianos E Antonarakis; Alessandro Brussino; Alfredo Brusco
Journal:  Hum Mol Genet       Date:  2015-02-20       Impact factor: 6.150

10.  Evolving New Skeletal Traits by cis-Regulatory Changes in Bone Morphogenetic Proteins.

Authors:  Vahan B Indjeian; Garrett A Kingman; Felicity C Jones; Catherine A Guenther; Jane Grimwood; Jeremy Schmutz; Richard M Myers; David M Kingsley
Journal:  Cell       Date:  2016-01-07       Impact factor: 41.582

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  91 in total

1.  Epigenetic Compensation Promotes Liver Regeneration.

Authors:  Shuang Wang; Chi Zhang; Dan Hasson; Anal Desai; Sucharita SenBanerjee; Elena Magnani; Chinweike Ukomadu; Amaia Lujambio; Emily Bernstein; Kirsten C Sadler
Journal:  Dev Cell       Date:  2019-06-20       Impact factor: 12.270

Review 2.  The epicardium as a hub for heart regeneration.

Authors:  Jingli Cao; Kenneth D Poss
Journal:  Nat Rev Cardiol       Date:  2018-10       Impact factor: 32.419

3.  Neonatal Heart Regeneration: Comprehensive Literature Review.

Authors:  Nicholas T Lam; Hesham A Sadek
Journal:  Circulation       Date:  2018-07-24       Impact factor: 29.690

4.  Engineering multicellular systems: using synthetic biology to control tissue self-organization.

Authors:  Marion B Johnson; Alexander R March; Leonardo Morsut
Journal:  Curr Opin Biomed Eng       Date:  2017-12

5.  Signals for cardiomyocyte proliferation during zebrafish heart regeneration.

Authors:  Mira I Pronobis; Kenneth D Poss
Journal:  Curr Opin Physiol       Date:  2020-02-19

Review 6.  Mechanisms of Cardiomyocyte Proliferation and Differentiation in Development and Regeneration.

Authors:  Jessie Wettig Yester; Bernhard Kühn
Journal:  Curr Cardiol Rep       Date:  2017-02       Impact factor: 2.931

Review 7.  Zebrafish heart regeneration: Factors that stimulate cardiomyocyte proliferation.

Authors:  D A Zuppo; M Tsang
Journal:  Semin Cell Dev Biol       Date:  2019-09-25       Impact factor: 7.727

8.  Melanocortin Receptor 4 Signaling Regulates Vertebrate Limb Regeneration.

Authors:  Mengshi Zhang; Youwei Chen; Hanqian Xu; Li Yang; Feng Yuan; Lei Li; Ying Xu; Ying Chen; Chao Zhang; Gufa Lin
Journal:  Dev Cell       Date:  2018-08-20       Impact factor: 12.270

9.  Development of a Zebrafish S1500+ Sentinel Gene Set for High-Throughput Transcriptomics.

Authors:  Michele R Balik-Meisner; Deepak Mav; Dhiral P Phadke; Logan J Everett; Ruchir R Shah; Tamara Tal; Peter J Shepard; B Alex Merrick; Richard S Paules
Journal:  Zebrafish       Date:  2019-06-12       Impact factor: 1.985

Review 10.  Regeneration Genetics.

Authors:  Chen-Hui Chen; Kenneth D Poss
Journal:  Annu Rev Genet       Date:  2017-08-30       Impact factor: 16.830

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