Literature DB >> 27044046

Agent-Based Modeling of Cancer Stem Cell Driven Solid Tumor Growth.

Jan Poleszczuk1, Paul Macklin2, Heiko Enderling3.   

Abstract

Computational modeling of tumor growth has become an invaluable tool to simulate complex cell-cell interactions and emerging population-level dynamics. Agent-based models are commonly used to describe the behavior and interaction of individual cells in different environments. Behavioral rules can be informed and calibrated by in vitro assays, and emerging population-level dynamics may be validated with both in vitro and in vivo experiments. Here, we describe the design and implementation of a lattice-based agent-based model of cancer stem cell driven tumor growth.

Entities:  

Keywords:  Agent-based model; Calibration; Cancer stem cell; Digital cell line; Domain; High performance; Search order; Tumor growth

Mesh:

Year:  2016        PMID: 27044046      PMCID: PMC6587968          DOI: 10.1007/7651_2016_346

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  9 in total

1.  Modeling heterogeneous tumor growth dynamics and cell-cell interactions at single-cell and cell-population resolution.

Authors:  Leonard A Harris; Samantha Beik; Patricia M M Ozawa; Lizandra Jimenez; Alissa M Weaver
Journal:  Curr Opin Syst Biol       Date:  2019-09-16

Review 2.  Cancer systems immunology.

Authors:  Nathan E Reticker-Flynn; Edgar G Engleman
Journal:  Elife       Date:  2020-07-13       Impact factor: 8.140

3.  An agent-based model of triple-negative breast cancer: the interplay between chemokine receptor CCR5 expression, cancer stem cells, and hypoxia.

Authors:  Kerri-Ann Norton; Travis Wallace; Niranjan B Pandey; Aleksander S Popel
Journal:  BMC Syst Biol       Date:  2017-07-11

4.  Distinguishing cell shoving mechanisms.

Authors:  Pingyu Nan; Darragh M Walsh; Kerry A Landman; Barry D Hughes
Journal:  PLoS One       Date:  2018-03-12       Impact factor: 3.240

Review 5.  A Review of Cell-Based Computational Modeling in Cancer Biology.

Authors:  John Metzcar; Yafei Wang; Randy Heiland; Paul Macklin
Journal:  JCO Clin Cancer Inform       Date:  2019-02

6.  Efficient Bayesian inference for stochastic agent-based models.

Authors:  Andreas Christ Sølvsten Jørgensen; Atiyo Ghosh; Marc Sturrock; Vahid Shahrezaei
Journal:  PLoS Comput Biol       Date:  2022-10-05       Impact factor: 4.779

7.  Multiscale modeling of collective cell migration elucidates the mechanism underlying tumor-stromal interactions in different spatiotemporal scales.

Authors:  Zarifeh Heidary; Shaghayegh Haghjooy Javanmard; Iman Izadi; Nasrin Zare; Jafar Ghaisari
Journal:  Sci Rep       Date:  2022-09-28       Impact factor: 4.996

Review 8.  The recent advances in the mathematical modelling of human pluripotent stem cells.

Authors:  L E Wadkin; S Orozco-Fuentes; I Neganova; M Lako; A Shukurov; N G Parker
Journal:  SN Appl Sci       Date:  2020-01-27

9.  Hybrid Automata Library: A flexible platform for hybrid modeling with real-time visualization.

Authors:  Rafael R Bravo; Etienne Baratchart; Jeffrey West; Ryan O Schenck; Anna K Miller; Jill Gallaher; Chandler D Gatenbee; David Basanta; Mark Robertson-Tessi; Alexander R A Anderson
Journal:  PLoS Comput Biol       Date:  2020-03-10       Impact factor: 4.475

  9 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.