Literature DB >> 32642602

Modeling heterogeneous tumor growth dynamics and cell-cell interactions at single-cell and cell-population resolution.

Leonard A Harris1, Samantha Beik2, Patricia M M Ozawa3, Lizandra Jimenez3, Alissa M Weaver3,4.   

Abstract

Cancer is a complex, dynamic disease that despite recent advances remains mostly incurable. Inter- and intratumoral heterogeneity are generally considered major drivers of therapy resistance, metastasis, and treatment failure. Recent advances in high-throughput experimentation have produced a wealth of data on tumor heterogeneity and researchers are increasingly turning to mathematical modeling to aid in the interpretation of these complex datasets. In this mini-review, we discuss three important classes of approaches for modeling cellular dynamics within heterogeneous tumors: agent-based models, population dynamics, and multiscale models. An important new focus, for which we provide an example, is the role of intratumoral cell-cell interactions.

Entities:  

Year:  2019        PMID: 32642602      PMCID: PMC7343346          DOI: 10.1016/j.coisb.2019.09.005

Source DB:  PubMed          Journal:  Curr Opin Syst Biol        ISSN: 2452-3100


  108 in total

Review 1.  Sensitivity analysis approaches applied to systems biology models.

Authors:  Z Zi
Journal:  IET Syst Biol       Date:  2011-11       Impact factor: 1.615

2.  Re-interpretation of the logistic equation for batch microbial growth in relation to Monod kinetics.

Authors:  F Kargi
Journal:  Lett Appl Microbiol       Date:  2009-01-23       Impact factor: 2.858

3.  StochKit2: software for discrete stochastic simulation of biochemical systems with events.

Authors:  Kevin R Sanft; Sheng Wu; Min Roh; Jin Fu; Rone Kwei Lim; Linda R Petzold
Journal:  Bioinformatics       Date:  2011-07-04       Impact factor: 6.937

4.  Modeling the Subclonal Evolution of Cancer Cell Populations.

Authors:  Diego Chowell; James Napier; Rohan Gupta; Karen S Anderson; Carlo C Maley; Melissa A Wilson Sayres
Journal:  Cancer Res       Date:  2017-11-29       Impact factor: 12.701

5.  Combination therapies and intra-tumoral competition: Insights from mathematical modeling.

Authors:  Elena Piretto; Marcello Delitala; Mario Ferraro
Journal:  J Theor Biol       Date:  2018-03-13       Impact factor: 2.691

6.  A Big Bang model of human colorectal tumor growth.

Authors:  Andrea Sottoriva; Haeyoun Kang; Zhicheng Ma; Trevor A Graham; Matthew P Salomon; Junsong Zhao; Paul Marjoram; Kimberly Siegmund; Michael F Press; Darryl Shibata; Christina Curtis
Journal:  Nat Genet       Date:  2015-02-09       Impact factor: 38.330

7.  Modeling of Cancer Stem Cell State Transitions Predicts Therapeutic Response.

Authors:  Mary E Sehl; Miki Shimada; Alfonso Landeros; Kenneth Lange; Max S Wicha
Journal:  PLoS One       Date:  2015-09-23       Impact factor: 3.240

Review 8.  A Review of Cell-Based Computational Modeling in Cancer Biology.

Authors:  John Metzcar; Yafei Wang; Randy Heiland; Paul Macklin
Journal:  JCO Clin Cancer Inform       Date:  2019-02

9.  Quantitative cell-based model predicts mechanical stress response of growing tumor spheroids over various growth conditions and cell lines.

Authors:  Paul Van Liedekerke; Johannes Neitsch; Tim Johann; Kevin Alessandri; Pierre Nassoy; Dirk Drasdo
Journal:  PLoS Comput Biol       Date:  2019-03-08       Impact factor: 4.475

10.  A stochastic model for immunotherapy of cancer.

Authors:  Martina Baar; Loren Coquille; Hannah Mayer; Michael Hölzel; Meri Rogava; Thomas Tüting; Anton Bovier
Journal:  Sci Rep       Date:  2016-04-11       Impact factor: 4.379

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  4 in total

1.  An in vitro model of tumor heterogeneity resolves genetic, epigenetic, and stochastic sources of cell state variability.

Authors:  Corey E Hayford; Darren R Tyson; C Jack Robbins; Peter L Frick; Vito Quaranta; Leonard A Harris
Journal:  PLoS Biol       Date:  2021-06-01       Impact factor: 8.029

2.  Reciprocal interactions between tumour cell populations enhance growth and reduce radiation sensitivity in prostate cancer.

Authors:  Marcin Paczkowski; Warren W Kretzschmar; Bostjan Markelc; Stanley K Liu; Leoni A Kunz-Schughart; Adrian L Harris; Mike Partridge; Helen M Byrne; Pavitra Kannan
Journal:  Commun Biol       Date:  2021-01-04

Review 3.  Navigating Multi-Scale Cancer Systems Biology Towards Model-Driven Clinical Oncology and Its Applications in Personalized Therapeutics.

Authors:  Mahnoor Naseer Gondal; Safee Ullah Chaudhary
Journal:  Front Oncol       Date:  2021-11-24       Impact factor: 6.244

4.  Multiscale modeling in disease.

Authors:  Ashlee N Ford Versypt
Journal:  Curr Opin Syst Biol       Date:  2021-05-08
  4 in total

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