Literature DB >> 2704070

Novel use of polymerase chain reaction to amplify cellular DNA adjacent to an integrated provirus.

J Silver1, V Keerikatte.   

Abstract

We describe a modification of the polymerase chain reaction technique which allows amplification of cellular DNA adjacent to an integrated provirus given sequence information for the provirus only. The modified technique should be generally useful for studies of insertional mutagenesis and other situations in which one wishes to isolate DNA adjacent to a region of known sequence.

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Year:  1989        PMID： 2704070      PMCID： PMC250604          DOI： 10.1128/JVI.63.5.1924-1928.1989

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  23 in total

1.  Genetic linkage of C3H/HeJ and BALB/c endogenous ecotropic C-type viruses to phosphoglucomutase-1 on chromosome 5.

Authors:  J N Ihle; D R Joseph; J J Domotor
Journal:  Science       Date:  1979-04-06       Impact factor: 47.728

2.  Local mutagenesis: a method for generating viral mutants with base substitutions in preselected regions of the viral genome.

Authors:  D Shortle; D Nathans
Journal:  Proc Natl Acad Sci U S A       Date:  1978-05       Impact factor: 11.205

3.  Genetic mapping of the ecotropic murine leukemia virus-inducing locus of BALB/c mouse to chromosome 5.

Authors:  C A Kozak; W P Rowe
Journal:  Science       Date:  1979-04-06       Impact factor: 47.728

4.  Ezymatic breakage and joining of deoxyribonucleic acid. VII. Properties of the enzyme-adenylate intermediate in the polynucleotide ligase reaction.

Authors:  B Weiss; A Thompson; C C Richardson
Journal:  J Biol Chem       Date:  1968-09-10       Impact factor: 5.157

5.  DNA flexibility studied by covalent closure of short fragments into circles.

Authors:  D Shore; J Langowski; R L Baldwin
Journal:  Proc Natl Acad Sci U S A       Date:  1981-08       Impact factor: 11.205

6.  Molecular cloning of infectious integrated murine leukemia virus DNA from infected mouse cells.

Authors:  D R Lowy; E Rands; S K Chattopadhyay; C F Garon; G L Hager
Journal:  Proc Natl Acad Sci U S A       Date:  1980-01       Impact factor: 11.205

7.  Characterization of proviruses cloned from mink cell focus-forming virus-infected cellular DNA.

Authors:  A S Khan; R Repaske; C F Garon; H W Chan; W P Rowe; M A Martin
Journal:  J Virol       Date:  1982-02       Impact factor: 5.103

8.  Variation in the number of copies and in the genomic organization of ecotropic murine leukemia virus proviral sequences in sublines of AKR mice.

Authors:  C E Buckler; S P Staal; W P Rowe; M A Martin
Journal:  J Virol       Date:  1982-08       Impact factor: 5.103

9.  DNA sequencing with chain-terminating inhibitors.

Authors:  F Sanger; S Nicklen; A R Coulson
Journal:  Proc Natl Acad Sci U S A       Date:  1977-12       Impact factor: 11.205

10.  A novel sequence segment and other nucleotide structural features in the long terminal repeat of a BALB/c mouse genomic leukemia virus-related DNA clone.

Authors:  C Y Ou; L R Boone; W K Yang
Journal:  Nucleic Acids Res       Date:  1983-08-25       Impact factor: 16.971
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  57 in total

Review 1.  Demystified ... the polymerase chain reaction.

Authors:  K R Baumforth; P N Nelson; J E Digby; J D O'Neil; P G Murray
Journal:  Mol Pathol       Date:  1999-02

2.  A novel method for constructing gene-targeting vectors.

Authors:  K Akiyama; H Watanabe; S Tsukada; H Sasai
Journal:  Nucleic Acids Res       Date:  2000-08-15       Impact factor: 16.971

3.  Isolation and analysis of retroviral integration targets by solo long terminal repeat inverse PCR.

Authors:  Yi Feng Jin; Toshio Ishibashi; Akio Nomoto; Michiaki Masuda
Journal:  J Virol       Date:  2002-06       Impact factor: 5.103

4.  Sequence specific generation of a DNA panhandle permits PCR amplification of unknown flanking DNA.

Authors:  D H Jones; S C Winistorfer
Journal:  Nucleic Acids Res       Date:  1992-02-11       Impact factor: 16.971

Review 5.  Molecular biology made easy. The polymerase chain reaction.

Authors:  A M Clarke; N P Mapstone; P Quirke
Journal:  Histochem J       Date:  1992-12

6.  Counting stem cells: methodological constraints.

Authors:  Leonid V Bystrykh; Evgenia Verovskaya; Erik Zwart; Mathilde Broekhuis; Gerald de Haan
Journal:  Nat Methods       Date:  2012-05-30       Impact factor: 28.547

7.  High-throughput, sensitive quantification of repopulating hematopoietic stem cell clones.

Authors:  Sanggu Kim; Namshin Kim; Angela P Presson; Dong Sung An; Si Hua Mao; Aylin C Bonifacino; Robert E Donahue; Samson A Chow; Irvin S Y Chen
Journal:  J Virol       Date:  2010-09-15       Impact factor: 5.103

8.  Genome-wide high-throughput integrome analyses by nrLAM-PCR and next-generation sequencing.

Authors:  Anna Paruzynski; Anne Arens; Richard Gabriel; Cynthia C Bartholomae; Simone Scholz; Wei Wang; Stephan Wolf; Hanno Glimm; Manfred Schmidt; Christof von Kalle
Journal:  Nat Protoc       Date:  2010-07-08       Impact factor: 13.491

9.  RTCGD: retroviral tagged cancer gene database.

Authors:  Keiko Akagi; Takeshi Suzuki; Robert M Stephens; Nancy A Jenkins; Neal G Copeland
Journal:  Nucleic Acids Res       Date:  2004-01-01       Impact factor: 16.971

10.  Comprehensive genomic access to vector integration in clinical gene therapy.

Authors:  Richard Gabriel; Ralph Eckenberg; Anna Paruzynski; Cynthia C Bartholomae; Ali Nowrouzi; Anne Arens; Steven J Howe; Alessandra Recchia; Claudia Cattoglio; Wei Wang; Katrin Faber; Kerstin Schwarzwaelder; Romy Kirsten; Annette Deichmann; Claudia R Ball; Kamaljit S Balaggan; Rafael J Yáñez-Muñoz; Robin R Ali; H Bobby Gaspar; Luca Biasco; Alessandro Aiuti; Daniela Cesana; Eugenio Montini; Luigi Naldini; Odile Cohen-Haguenauer; Fulvio Mavilio; Adrian J Thrasher; Hanno Glimm; Christof von Kalle; William Saurin; Manfred Schmidt
Journal:  Nat Med       Date:  2009-11-22       Impact factor: 53.440
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