Literature DB >> 27036852

SAD phasing: History, current impact and future opportunities.

John P Rose1, Bi-Cheng Wang2.   

Abstract

Single wavelength anomalous diffraction (SAD) can trace its beginnings to the early 1950s. Researchers at the time recognized that SAD offers some unique features that might be advantageous for crystallographic phasing, despite the fact that at that time recording accurate SAD data was problematic. In this review we will follow the trail from those early days, highlighting key advances in the field and interpreting them in terms on how they stimulated continued phasing development that produced the theoretical foundation for the routine macromolecular structure determination by SAD today. The technological advances over the past three decades in both hardware and software, which played a significant role in making SAD phasing a 'first choice method', will also be described.
Copyright © 2016 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Current methods; Early work; Hardware and software; Native SAD; Phasing; Single wavelength anomalous diffraction

Mesh:

Substances:

Year:  2016        PMID: 27036852     DOI: 10.1016/j.abb.2016.03.018

Source DB:  PubMed          Journal:  Arch Biochem Biophys        ISSN: 0003-9861            Impact factor:   4.013


  7 in total

1.  Destruction-and-diffraction by X-ray free-electron laser.

Authors:  Jimin Wang
Journal:  Protein Sci       Date:  2016-06-13       Impact factor: 6.725

2.  Substructure determination using phase-retrieval techniques.

Authors:  Pavol Skubák
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-02-01       Impact factor: 7.652

3.  Synchrotron microcrystal native-SAD phasing at a low energy.

Authors:  Gongrui Guo; Ping Zhu; Martin R Fuchs; Wuxian Shi; Babak Andi; Yuan Gao; Wayne A Hendrickson; Sean McSweeney; Qun Liu
Journal:  IUCrJ       Date:  2019-05-03       Impact factor: 4.769

4.  The copper(II)-binding tripeptide GHK, a valuable crystallization and phasing tag for macromolecular crystallography.

Authors:  Alexander Mehr; Fabian Henneberg; Ashwin Chari; Dirk Görlich; Trevor Huyton
Journal:  Acta Crystallogr D Struct Biol       Date:  2020-11-19       Impact factor: 7.652

5.  Phosphorus and sulfur SAD phasing of the nucleic acid-bound DNA-binding domain of interferon regulatory factor 4.

Authors:  Alessandro Agnarelli; Kamel El Omari; Ramona Duman; Armin Wagner; Erika J Mancini
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-06-29       Impact factor: 1.056

6.  Introducing site-specific cysteines into nanobodies for mercury labelling allows de novo phasing of their crystal structures.

Authors:  Simon Boje Hansen; Nick Stub Laursen; Gregers Rom Andersen; Kasper R Andersen
Journal:  Acta Crystallogr D Struct Biol       Date:  2017-09-27       Impact factor: 7.652

7.  Experimental phase determination with selenomethionine or mercury-derivatization in serial femtosecond crystallography.

Authors:  Keitaro Yamashita; Naoyuki Kuwabara; Takanori Nakane; Tomohiro Murai; Eiichi Mizohata; Michihiro Sugahara; Dongqing Pan; Tetsuya Masuda; Mamoru Suzuki; Tomomi Sato; Atsushi Kodan; Tomohiro Yamaguchi; Eriko Nango; Tomoyuki Tanaka; Kensuke Tono; Yasumasa Joti; Takashi Kameshima; Takaki Hatsui; Makina Yabashi; Hiroshi Manya; Tamao Endo; Ryuichi Kato; Toshiya Senda; Hiroaki Kato; So Iwata; Hideo Ago; Masaki Yamamoto; Fumiaki Yumoto; Toru Nakatsu
Journal:  IUCrJ       Date:  2017-08-08       Impact factor: 4.769

  7 in total

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