Literature DB >> 27033521

Genome-wide screen identifies novel machineries required for both ciliogenesis and cell cycle arrest upon serum starvation.

Ji Hyun Kim1, Soo Mi Ki1, Je-Gun Joung2, Eric Scott3, Susanne Heynen-Genel4, Pedro Aza-Blanc4, Chang Hyuk Kwon2, Joon Kim5, Joseph G Gleeson6, Ji Eun Lee7.   

Abstract

Biogenesis of the primary cilium, a cellular organelle mediating various signaling pathways, is generally coordinated with cell cycle exit/re-entry. Although the dynamic cell cycle-associated profile of the primary cilium has been largely accepted, the mechanism governing the link between ciliogenesis and cell cycle progression has been poorly understood. Using a human genome-wide RNAi screen, we identify genes encoding subunits of the spliceosome and proteasome as novel regulators of ciliogenesis. We demonstrate that 1) the mRNA processing-related hits are essential for RNA expression of molecules acting in cilia disassembly, such as AURKA and PLK1, and 2) the ubiquitin-proteasome systems (UPS)-involved hits are necessary for proteolysis of molecules acting in cilia assembly, such as IFT88 and CPAP. In particular, we show that these screen hit-associated mechanisms are crucial for both cilia assembly and cell cycle arrest in response to serum withdrawal. Finally, our data suggest that the mRNA processing mechanism may modulate the UPS-dependent decay of cilia assembly regulators to control ciliary resorption-coupled cell cycle re-entry.
Copyright © 2016 The Authors. Published by Elsevier B.V. All rights reserved.

Entities:  

Keywords:  Cell cycle; Ciliogenesis; High-content screen; Ubiquitin–proteasome system; mRNA processing

Mesh:

Substances:

Year:  2016        PMID: 27033521      PMCID: PMC4886714          DOI: 10.1016/j.bbamcr.2016.03.021

Source DB:  PubMed          Journal:  Biochim Biophys Acta        ISSN: 0006-3002


  44 in total

1.  Vertebrate Smoothened functions at the primary cilium.

Authors:  Kevin C Corbit; Pia Aanstad; Veena Singla; Andrew R Norman; Didier Y R Stainier; Jeremy F Reiter
Journal:  Nature       Date:  2005-08-31       Impact factor: 49.962

2.  Nek2 localises to the distal portion of the mother centriole/basal body and is required for timely cilium disassembly at the G2/M transition.

Authors:  Cosma Spalluto; David I Wilson; Tom Hearn
Journal:  Eur J Cell Biol       Date:  2012-05-19       Impact factor: 4.492

3.  Reduced fidelity of branch point recognition and alternative splicing induced by the anti-tumor drug spliceostatin A.

Authors:  Anna Corrionero; Belén Miñana; Juan Valcárcel
Journal:  Genes Dev       Date:  2011-03-01       Impact factor: 11.361

4.  The T box transcription factor no tail in ciliated cells controls zebrafish left-right asymmetry.

Authors:  Jeffrey D Amack; H Joseph Yost
Journal:  Curr Biol       Date:  2004-04-20       Impact factor: 10.834

5.  PCM1 recruits Plk1 to the pericentriolar matrix to promote primary cilia disassembly before mitotic entry.

Authors:  Gang Wang; Qiang Chen; Xiaoyan Zhang; Boyan Zhang; Xiaolong Zhuo; Junjun Liu; Qing Jiang; Chuanmao Zhang
Journal:  J Cell Sci       Date:  2013-01-23       Impact factor: 5.285

Review 6.  HEF1-aurora A interactions: points of dialog between the cell cycle and cell attachment signaling networks.

Authors:  Elena N Pugacheva; Erica A Golemis
Journal:  Cell Cycle       Date:  2006-02-15       Impact factor: 4.534

7.  Visualizing spatiotemporal dynamics of multicellular cell-cycle progression.

Authors:  Asako Sakaue-Sawano; Hiroshi Kurokawa; Toshifumi Morimura; Aki Hanyu; Hiroshi Hama; Hatsuki Osawa; Saori Kashiwagi; Kiyoko Fukami; Takaki Miyata; Hiroyuki Miyoshi; Takeshi Imamura; Masaharu Ogawa; Hisao Masai; Atsushi Miyawaki
Journal:  Cell       Date:  2008-02-08       Impact factor: 41.582

8.  Functional genomic screen for modulators of ciliogenesis and cilium length.

Authors:  Joon Kim; Ji Eun Lee; Susanne Heynen-Genel; Eigo Suyama; Keiichiro Ono; Kiyoung Lee; Trey Ideker; Pedro Aza-Blanc; Joseph G Gleeson
Journal:  Nature       Date:  2010-04-15       Impact factor: 49.962

9.  The transition zone protein Rpgrip1l regulates proteasomal activity at the primary cilium.

Authors:  Christoph Gerhardt; Johanna Maria Lier; Stephan Burmühl; Andreas Struchtrup; Kathleen Deutschmann; Maik Vetter; Tristan Leu; Sandra Reeg; Tilman Grune; Ulrich Rüther
Journal:  J Cell Biol       Date:  2015-07-06       Impact factor: 10.539

10.  Protein kinase DYRK2 is a scaffold that facilitates assembly of an E3 ligase.

Authors:  Subbareddy Maddika; Junjie Chen
Journal:  Nat Cell Biol       Date:  2009-03-15       Impact factor: 28.824

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  12 in total

1.  Ganetespib limits ciliation and cystogenesis in autosomal-dominant polycystic kidney disease (ADPKD).

Authors:  Anna S Nikonova; Alexander Y Deneka; Anna A Kiseleva; Vladislav Korobeynikov; Anna Gaponova; Ilya G Serebriiskii; Meghan C Kopp; Harvey H Hensley; Tamina N Seeger-Nukpezah; Stefan Somlo; David A Proia; Erica A Golemis
Journal:  FASEB J       Date:  2018-01-10       Impact factor: 5.191

2.  Mitotic control by mRNA splicing regulators ensures primary cilia formation.

Authors:  Ji Hyun Kim; Ji Eun Lee
Journal:  Anim Cells Syst (Seoul)       Date:  2016-12-07       Impact factor: 1.815

3.  The deubiquitinating enzyme Usp14 controls ciliogenesis and Hedgehog signaling.

Authors:  Filomena Massa; Roberta Tammaro; Miguel A Prado; Marcella Cesana; Byung-Hoon Lee; Daniel Finley; Brunella Franco; Manuela Morleo
Journal:  Hum Mol Genet       Date:  2019-03-01       Impact factor: 6.150

4.  The centrosomal OFD1 protein interacts with the translation machinery and regulates the synthesis of specific targets.

Authors:  Daniela Iaconis; Maria Monti; Mario Renda; Arianne van Koppen; Roberta Tammaro; Marco Chiaravalli; Flora Cozzolino; Paola Pignata; Claudia Crina; Piero Pucci; Alessandra Boletta; Vincenzo Belcastro; Rachel H Giles; Enrico Maria Surace; Simone Gallo; Mario Pende; Brunella Franco
Journal:  Sci Rep       Date:  2017-04-27       Impact factor: 4.379

Review 5.  Mutation spectrum of PRPF31, genotype-phenotype correlation in retinitis pigmentosa, and opportunities for therapy.

Authors:  Gabrielle Wheway; Andrew Douglas; Diana Baralle; Elsa Guillot
Journal:  Exp Eye Res       Date:  2020-01-31       Impact factor: 3.467

Review 6.  Targeting E3 Ubiquitin Ligases and Deubiquitinases in Ciliopathy and Cancer.

Authors:  Takashi Shiromizu; Mizuki Yuge; Kousuke Kasahara; Daishi Yamakawa; Takaaki Matsui; Yasumasa Bessho; Masaki Inagaki; Yuhei Nishimura
Journal:  Int J Mol Sci       Date:  2020-08-19       Impact factor: 5.923

Review 7.  The Role of the U5 snRNP in Genetic Disorders and Cancer.

Authors:  Katherine A Wood; Megan A Eadsforth; William G Newman; Raymond T O'Keefe
Journal:  Front Genet       Date:  2021-01-28       Impact factor: 4.599

Review 8.  Mechanisms of ciliogenesis suppression in dividing cells.

Authors:  Hidemasa Goto; Hironori Inaba; Masaki Inagaki
Journal:  Cell Mol Life Sci       Date:  2016-09-26       Impact factor: 9.261

9.  The E3 ubiquitin ligase UBR5 regulates centriolar satellite stability and primary cilia.

Authors:  Robert F Shearer; Kari-Anne Myrum Frikstad; Jessie McKenna; Rachael A McCloy; Niantao Deng; Andrew Burgess; Trond Stokke; Sebastian Patzke; Darren N Saunders
Journal:  Mol Biol Cell       Date:  2018-05-09       Impact factor: 4.138

10.  A CRISPR and high-content imaging assay compliant with ACMG/AMP guidelines for clinical variant interpretation in ciliopathies.

Authors:  Liliya Nazlamova; N Simon Thomas; Man-Kim Cheung; Jelmer Legebeke; Jenny Lord; Reuben J Pengelly; William J Tapper; Gabrielle Wheway
Journal:  Hum Genet       Date:  2020-10-23       Impact factor: 4.132

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