Literature DB >> 27032088

Making big sense from big data in toxicology by read-across.

Thomas Hartung1,2.   

Abstract

Modern information technologies have made big data available in safety sciences, i.e., extremely large data sets that may be analyzed only computationally to reveal patterns, trends and associations. This happens by (1) compilation of large sets of existing data, e.g., as a result of the European REACH regulation, (2) the use of omics technologies and (3) systematic robotized testing in a high-throughput manner. All three approaches and some other high-content technologies leave us with big data--the challenge is now to make big sense of these data. Read-across, i.e., the local similarity-based intrapolation of properties, is gaining momentum with increasing data availability and consensus on how to process and report it. It is predominantly applied to in vivo test data as a gap-filling approach, but can similarly complement other incomplete datasets. Big data are first of all repositories for finding similar substances and ensure that the available data is fully exploited. High-content and high-throughput approaches similarly require focusing on clusters, in this case formed by underlying mechanisms such as pathways of toxicity. The closely connected properties, i.e., structural and biological similarity, create the confidence needed for predictions of toxic properties. Here, a new web-based tool under development called REACH-across, which aims to support and automate structure-based read-across, is presented among others.

Entities:  

Keywords:  computational toxicology; data-mining; databases; in silico; read-across

Mesh:

Year:  2016        PMID: 27032088     DOI: 10.14573/altex.1603091

Source DB:  PubMed          Journal:  ALTEX        ISSN: 1868-596X            Impact factor:   6.043


  19 in total

Review 1.  Advancing computer-aided drug discovery (CADD) by big data and data-driven machine learning modeling.

Authors:  Linlin Zhao; Heather L Ciallella; Lauren M Aleksunes; Hao Zhu
Journal:  Drug Discov Today       Date:  2020-07-11       Impact factor: 7.851

Review 2.  Big-data and machine learning to revamp computational toxicology and its use in risk assessment.

Authors:  Thomas Luechtefeld; Craig Rowlands; Thomas Hartung
Journal:  Toxicol Res (Camb)       Date:  2018-05-01       Impact factor: 3.524

3.  The Threshold of Toxicological Concern for prenatal developmental toxicity in rats and rabbits.

Authors:  B van Ravenzwaay; X Jiang; T Luechtefeld; T Hartung
Journal:  Regul Toxicol Pharmacol       Date:  2017-06-20       Impact factor: 3.271

4.  Avoiding Regrettable Substitutions: Green Toxicology for Sustainable Chemistry.

Authors:  Alexandra Maertens; Emily Golden; Thomas Hartung
Journal:  ACS Sustain Chem Eng       Date:  2021-06-01       Impact factor: 9.224

Review 5.  In silico toxicology: From structure-activity relationships towards deep learning and adverse outcome pathways.

Authors:  Jennifer Hemmerich; Gerhard F Ecker
Journal:  Wiley Interdiscip Rev Comput Mol Sci       Date:  2020-03-31

Review 6.  Perspectives on In Vitro to In Vivo Extrapolations.

Authors:  Thomas Hartung
Journal:  Appl In Vitro Toxicol       Date:  2018-12-08

7.  Application of grouping and read-across for the evaluation of parabens of different chain lengths with a particular focus on endocrine properties.

Authors:  Susann Fayyaz; Reinhard Kreiling; Ursula G Sauer
Journal:  Arch Toxicol       Date:  2021-01-18       Impact factor: 5.153

8.  Evaluating the Impact of the U.S. National Toxicology Program: A Case Study on Hexavalent Chromium.

Authors:  Yun Xie; Stephanie Holmgren; Danica M K Andrews; Mary S Wolfe
Journal:  Environ Health Perspect       Date:  2016-08-02       Impact factor: 9.031

9.  Green Toxicology: a strategy for sustainable chemical and material development.

Authors:  Sarah E Crawford; Thomas Hartung; Henner Hollert; Björn Mathes; Bennard van Ravenzwaay; Thomas Steger-Hartmann; Christoph Studer; Harald F Krug
Journal:  Environ Sci Eur       Date:  2017-04-04       Impact factor: 5.893

10.  Computational approaches to chemical hazard assessment.

Authors:  Thomas Luechtefeld; Thomas Hartung
Journal:  ALTEX       Date:  2017       Impact factor: 6.043

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